PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT31946

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 726aa MW: 80751 Da PI: 4.4626

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT31946	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40	9e-13	574	615	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW+++E el+++av+q+G++ ++I + ++ gRt+ q+k+++ k OIT31946 574 RWSKQETELFYEAVQQFGTD-LSLIQQLFP-GRTRRQLKLKYKK 615 9*****************.*****.*********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence
MDLLDDILAD GASKTVKAGG KFQPKAKPRP VKKGPAVASS TVSLTSKHTG DTVATDSFEA 60 LKKDGKNSQN YDEQSSVLAE PSLEHPLAAE TLGPSVGSYL DISTVVPDNS EDSKTCLEKS 120 EGEYADIYIG LDSFDDLLPI SSAIENSSPA TDPSAAHVAG AEKGQEQLSI PVSSVDDSAP 180 STSNLQPDEV AACQDPLTCQ GSVVPVSGSC QMEMDSYHSL EADILGVTIT SGQSTRRFQS 240 KSKLQVYRER YDTSIPDSDA VESVSCQPNS HSVHSEMDFV DRGKEHGFPA DDVLDFSARG 300 FDDNIITEST HEFQVHEEYV TEASHSDFGI PAELPESTSQ MPEEPVHQRP KTKKQKLPAS 360 DLSAITEENG AGRSLRSRRK SVNANRLVDE SEVVADDGEY VPEQPNDSVT NGNDEDLLLE 420 NESQGKKVQK KSKRTVAEDG KQVRKSKKTT EASDQAANKK PKKFSHSTRQ KRRQVNKALL 480 EAPEYEIDYQ KVPIKDLIIL GEHRERLAKK DAAASQIPTT DQSAGASVSN YNEDESYPSD 540 DGAEDNDHQI GSRAQDSSAY FNYQTYMDKT PSTRWSKQET ELFYEAVQQF GTDLSLIQQL 600 FPGRTRRQLK LKYKKEERQH PFRLHDALTN RSKDHSHFER VIERLKQIEA EELQKADKDE 660 SIDLTREQEV EEGTQEINEE EVNSEHVEEK EVEAVEQQDV PEMESPVEDY DSEDDSWRWS 720 QYKSEV

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence

MDLLDDILAD GASKTVKAGG KFQPKAKPRP VKKGPAVASS TVSLTSKHTG DTVATDSFEA  60
LKKDGKNSQN YDEQSSVLAE PSLEHPLAAE TLGPSVGSYL DISTVVPDNS EDSKTCLEKS  120
EGEYADIYIG LDSFDDLLPI SSAIENSSPA TDPSAAHVAG AEKGQEQLSI PVSSVDDSAP  180
STSNLQPDEV AACQDPLTCQ GSVVPVSGSC QMEMDSYHSL EADILGVTIT SGQSTRRFQS  240
KSKLQVYRER YDTSIPDSDA VESVSCQPNS HSVHSEMDFV DRGKEHGFPA DDVLDFSARG  300
FDDNIITEST HEFQVHEEYV TEASHSDFGI PAELPESTSQ MPEEPVHQRP KTKKQKLPAS  360
DLSAITEENG AGRSLRSRRK SVNANRLVDE SEVVADDGEY VPEQPNDSVT NGNDEDLLLE  420
NESQGKKVQK KSKRTVAEDG KQVRKSKKTT EASDQAANKK PKKFSHSTRQ KRRQVNKALL  480
EAPEYEIDYQ KVPIKDLIIL GEHRERLAKK DAAASQIPTT DQSAGASVSN YNEDESYPSD  540
DGAEDNDHQI GSRAQDSSAY FNYQTYMDKT PSTRWSKQET ELFYEAVQQF GTDLSLIQQL  600
FPGRTRRQLK LKYKKEERQH PFRLHDALTN RSKDHSHFER VIERLKQIEA EELQKADKDE  660
SIDLTREQEV EEGTQEINEE EVNSEHVEEK EVEAVEQQDV PEMESPVEDY DSEDDSWRWS  720
QYKSEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	3e-50	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OIT31946