PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT31937

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 1001aa MW: 111270 Da PI: 4.9035

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT31937	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.5	3.1e-18	36	80	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEde+l +av+q+ g++Wk+Ia+++ Rt+ qc +rwqk+l OIT31937 36 QWTPEEDEILRQAVQQFKGKSWKRIAECFK-DRTDVQCLHRWQKVL 80 7**************************9.**********986 PP
2	Myb_DNA-binding	59.9	5.5e-19	86	132	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++v+++G++ W+tIa+++ gR +kqc++rw+++l OIT31937 86 KGSWTKEEDDKLIELVNRYGPKKWSTIAQELA-GRIGKQCRERWHNHL 132 799***************************.***********97 PP
3	Myb_DNA-binding	45.8	1.4e-14	138	180	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ a+ + gR+++ +k++w+ OIT31937 138 KEPWTQEEELTLIRAHQVYGNK-WAELAKVLH-GRSDNAIKNHWH 180 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence
MESDKTSTTP SDDISSLQRV QPSHGRTSGP KRRSSQWTPE EDEILRQAVQ QFKGKSWKRI 60 AECFKDRTDV QCLHRWQKVL DPELVKGSWT KEEDDKLIEL VNRYGPKKWS TIAQELAGRI 120 GKQCRERWHN HLNPAINKEP WTQEEELTLI RAHQVYGNKW AELAKVLHGR SDNAIKNHWH 180 SSVKKKLDSY LASGLLAQFP ALPNVNHQNQ SVPSSSMTLQ QNSEDESVHK EGTEAEDSSV 240 KKKLDSYLAS GLLGEFPALP NVNHQNQSVP SSSMTLQQNS EDESVHKEGA EAEEVPECSQ 300 GSNFAGCSQS TSDLGNTFVH IRENGGMSEE SICKKDATSS TAPCCRNYSP VFQDVSCSML 360 KVPSELVDSK FLEHNLSHDW GNSMEEDWQF NRDDIPNISP LEFIQESSGI SMHCLNGNDN 420 HDMVATANVG NVVEGPYKPN EMFVSVDGSM MVCPEEGIPQ CSPSETGVNG CGQPTYSLFY 480 QSSNYQIPEV GDMVPQNCNA LSFDDFEASF HQPFSVPSQF SSEDRSPVFD IVLNQFHNPP 540 LEGPDHMKDS SRIVPVNDLG STTSNTVQTC LLNENLFVQG EQKDGGALCY DPPRFPSSDV 600 PFFCCDLIQS GSDTQEEYSP FGIRQLMMAS ANCLTPLRLW DSPSRDSPDA ILKSAAKTFT 660 GTPSILKKRH RHLLSPLSEK RCEKKLESDL NQKSFSNMTT NFSRLDDMFD ESANEKASME 720 DKENLHPSSE DGRKEEGEIS GANDATGKVK QPPGVLVELS SNDLFLSPDR FLIKCDRATS 780 LSNKALGKQY ARRLEAASNQ VIVSSSFETS CLSVVCSPDI RGKRRSSVVI ATSAALGNTA 840 EDSENRFGAE TLSISGETPY KRSFESPSAW KSPWFMNSFP PSTRYDTELE FEDLALFMSP 900 GDRSYDAIGL MKQLSEQTAP SIADAHQILG SEIPETNMSK RNSKKQKADE NCTLLDSNAT 960 SERRTLDFNE CGTPGKGKET TKFDSNNSFS SPSSYLLKYC R

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence

MESDKTSTTP SDDISSLQRV QPSHGRTSGP KRRSSQWTPE EDEILRQAVQ QFKGKSWKRI  60
AECFKDRTDV QCLHRWQKVL DPELVKGSWT KEEDDKLIEL VNRYGPKKWS TIAQELAGRI  120
GKQCRERWHN HLNPAINKEP WTQEEELTLI RAHQVYGNKW AELAKVLHGR SDNAIKNHWH  180
SSVKKKLDSY LASGLLAQFP ALPNVNHQNQ SVPSSSMTLQ QNSEDESVHK EGTEAEDSSV  240
KKKLDSYLAS GLLGEFPALP NVNHQNQSVP SSSMTLQQNS EDESVHKEGA EAEEVPECSQ  300
GSNFAGCSQS TSDLGNTFVH IRENGGMSEE SICKKDATSS TAPCCRNYSP VFQDVSCSML  360
KVPSELVDSK FLEHNLSHDW GNSMEEDWQF NRDDIPNISP LEFIQESSGI SMHCLNGNDN  420
HDMVATANVG NVVEGPYKPN EMFVSVDGSM MVCPEEGIPQ CSPSETGVNG CGQPTYSLFY  480
QSSNYQIPEV GDMVPQNCNA LSFDDFEASF HQPFSVPSQF SSEDRSPVFD IVLNQFHNPP  540
LEGPDHMKDS SRIVPVNDLG STTSNTVQTC LLNENLFVQG EQKDGGALCY DPPRFPSSDV  600
PFFCCDLIQS GSDTQEEYSP FGIRQLMMAS ANCLTPLRLW DSPSRDSPDA ILKSAAKTFT  660
GTPSILKKRH RHLLSPLSEK RCEKKLESDL NQKSFSNMTT NFSRLDDMFD ESANEKASME  720
DKENLHPSSE DGRKEEGEIS GANDATGKVK QPPGVLVELS SNDLFLSPDR FLIKCDRATS  780
LSNKALGKQY ARRLEAASNQ VIVSSSFETS CLSVVCSPDI RGKRRSSVVI ATSAALGNTA  840
EDSENRFGAE TLSISGETPY KRSFESPSAW KSPWFMNSFP PSTRYDTELE FEDLALFMSP  900
GDRSYDAIGL MKQLSEQTAP SIADAHQILG SEIPETNMSK RNSKKQKADE NCTLLDSNAT  960
SERRTLDFNE CGTPGKGKET TKFDSNNSFS SPSSYLLKYC R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	1e-101	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT31937