PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT31831

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 434aa MW: 47143.5 Da PI: 8.7481

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT31831	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.5	4e-12	49	75	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C++++rtG C yG++C+++H++ OIT31831 49 PGVPDCSYYMRTGSCGYGANCRYNHPR 75 5789*********************96 PP
2	zf-CCCH	40.6	4.4e-13	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ OIT31831 96 EPMCQYYLRTGTCKFGASCKFHHPK 120 789********************96 PP
3	zf-CCCH	33.7	6.1e-11	142	166	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C+++++tG+Ck+G +Ck++H++ OIT31831 142 EIECSYYLKTGHCKFGITCKYHHPQ 166 568********************97 PP
4	zf-CCCH	37.5	4.1e-12	296	322	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tG Ck+G++C+++H+p OIT31831 296 PGQPTCQYYMKTGDCKFGSSCRYHHPP 322 57899********************97 PP
5	zf-CCCH	27.8	4.4e-09	343	368	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C+f++ G+Ck+G CkF H++ OIT31831 343 GVQPCSFYLLKGFCKFGRACKFDHPM 368 6789********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MELYGRSTGS NGSQSDHQSE WVPVEQETAL DESMQRLGLW GREIYPERPG VPDCSYYMRT 60 GSCGYGANCR YNHPRDRAYG GKMQLERVEF PERLGEPMCQ YYLRTGTCKF GASCKFHHPK 120 NLGGSLSNIP LNTHGYPLRP GEIECSYYLK TGHCKFGITC KYHHPQTAGI SVPAPARPFY 180 PTVQSLPAPP EEYNSASTGL RVARPPLLPG SYVPSAYGPV LLHPGVVTIQ NWSPYSGPVS 240 PALSPGAQPS AGVTSIYGIS QLASSTHAFA GTYSPLHSAA SPSSKTQKEK SFPERPGQPT 300 CQYYMKTGDC KFGSSCRYHH PPDWIASKTN CAISPLGLPL RPGVQPCSFY LLKGFCKFGR 360 ACKFDHPMGT VQYSSSASSL PDLPIAPYML RSSFAFAPTL LPELQAGFVS GSKVDAASLS 420 RPSSSLKVQL VALT

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MELYGRSTGS NGSQSDHQSE WVPVEQETAL DESMQRLGLW GREIYPERPG VPDCSYYMRT  60
GSCGYGANCR YNHPRDRAYG GKMQLERVEF PERLGEPMCQ YYLRTGTCKF GASCKFHHPK  120
NLGGSLSNIP LNTHGYPLRP GEIECSYYLK TGHCKFGITC KYHHPQTAGI SVPAPARPFY  180
PTVQSLPAPP EEYNSASTGL RVARPPLLPG SYVPSAYGPV LLHPGVVTIQ NWSPYSGPVS  240
PALSPGAQPS AGVTSIYGIS QLASSTHAFA GTYSPLHSAA SPSSKTQKEK SFPERPGQPT  300
CQYYMKTGDC KFGSSCRYHH PPDWIASKTN CAISPLGLPL RPGVQPCSFY LLKGFCKFGR  360
ACKFDHPMGT VQYSSSASSL PDLPIAPYML RSSFAFAPTL LPELQAGFVS GSKVDAASLS  420
RPSSSLKVQL VALT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-180	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT31831