PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT31634
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 187aa    MW: 20698.1 Da    PI: 7.8042
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT31634genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601352.8e-4211110199
    DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
               +CaaCk+lrrkC ++ C++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++
  OIT31634  11 PCAACKFLRRKCLPGnCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNA 110
               7***********8855*******************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MASSSSYSNP PCAACKFLRR KCLPGNCIFA PYFPPEEPTK FANVHKIFGA SNVSKLLNEI  60
QPHQREDAVN SLAYEAEARI KDPVYGCVGA ISVLQRQVIR LQKELDATNA DLMRYINPSG  120
GSMNNQMVNQ QRSNLNYGRR MGPVGGTTTG FDQNYGFCVP SYNSHNTWNN NTISGNHNPE  180
PDDDSSM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.12e-69LBD family protein