PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT31289 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 24568.9 Da PI: 7.3661 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.8 | 2.7e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA r+ +Pv+Gavg++++++++++q+++e++l OIT31289 2 SCNGCRVLRKGCSENCILRPCLqwietAEAQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLYEAAGRTVNPVNGAVGLLWTGNWHVCQAAVETVL 102 6*********************9999777889****************************************************************99987 PP DUF260 97 l 97 + OIT31289 103 R 103 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MSCNGCRVLR KGCSENCILR PCLQWIETAE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PSLFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI PDFLGASLDI 120 DESSECTNVF KLQHPSQNNI QPTMQKRRRF PEEASKVLQL ADLDLSLTPG FQSQKVFSHA 180 LPENRRPGTP SMNSEESGTT TCFESGTVIG NHQGYEPKLL SLFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-86 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT31289 |