PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT30706

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 541aa MW: 59090.7 Da PI: 6.5169

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT30706	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.7e-09	356	404	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OIT30706 356 NSHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 404 58***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MDMSSKNDTE QLKGNEDAAN FQLPNVSLEW QLSGTNLTNA SIGMVPKSDT TVDSFYPTIW 60 DRPTNSPNLS FYRNNVQINP STTNPHGIAE IGSGCARGGV DRTVGMSWNP PNAMLKGGVF 120 VPPNIGMLPQ SLAQLPADSG FIERAARFSC FSGGNFSDMM NPFSVPESVK PCYRGLAPTC 180 RSEEVFASNG LNSPSAINPQ KQHMRNAVES SKDVALHREH ETNKESPLKN AKKNENLARS 240 QGEGKEAVGL SGNESDEAEC SGRHEMEGAR EESSSKGLGS KKRKRYGQDA QPDQMKGAQQ 300 PPSEHAQDQT EIQGEQNLNS TASKPGEKNS KERSQASDPP KEEYIHIRAR RGQATNSHSL 360 AERVRREKIS ERMKYLQDLV PGCNKVTGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPQ 420 LDFNLDGLLA KDILHSRAGP SSSLVFPPDN MTMPYTSLHA LQSGLLQSGF PGVGNCTDSF 480 RRSINSHYAS MSGGYKDTSS QVPNIWDDQL HNVVEMGFNS SAPLNSQDLS SLPPGQMKAE 540 P

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MDMSSKNDTE QLKGNEDAAN FQLPNVSLEW QLSGTNLTNA SIGMVPKSDT TVDSFYPTIW  60
DRPTNSPNLS FYRNNVQINP STTNPHGIAE IGSGCARGGV DRTVGMSWNP PNAMLKGGVF  120
VPPNIGMLPQ SLAQLPADSG FIERAARFSC FSGGNFSDMM NPFSVPESVK PCYRGLAPTC  180
RSEEVFASNG LNSPSAINPQ KQHMRNAVES SKDVALHREH ETNKESPLKN AKKNENLARS  240
QGEGKEAVGL SGNESDEAEC SGRHEMEGAR EESSSKGLGS KKRKRYGQDA QPDQMKGAQQ  300
PPSEHAQDQT EIQGEQNLNS TASKPGEKNS KERSQASDPP KEEYIHIRAR RGQATNSHSL  360
AERVRREKIS ERMKYLQDLV PGCNKVTGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPQ  420
LDFNLDGLLA KDILHSRAGP SSSLVFPPDN MTMPYTSLHA LQSGLLQSGF PGVGNCTDSF  480
RRSINSHYAS MSGGYKDTSS QVPNIWDDQL HNVVEMGFNS SAPLNSQDLS SLPPGQMKAE  540
P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-104	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT30706