PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30605
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 306aa    MW: 34215.3 Da    PI: 5.9182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30605genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-14120166354
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               + h  +Er+RR+r+ ++f  L +l+P++     kKl+Ka++L  A++YIk+L
  OIT30605 120 QDHVVAERKRRERLTQRFIALSTLIPNL-----KKLDKASVLGDAIKYIKQL 166
               56999***********************.....9*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MDISSATWWS EMEGTDMNDH SFNEMPFNKP FSSCNYGYSS TSPSANTTTV ATSNHFENLN  60
YTSVKTELTS GTTLNFSSSV SNMDSDDFGD SQNLIQALGF GAADTSTLKK NYNKTSLQAQ  120
DHVVAERKRR ERLTQRFIAL STLIPNLKKL DKASVLGDAI KYIKQLDGQV KTLEEKAKNI  180
CSEESVVAVK RARVLSSYDD YSSSSDENSS ISTDRSFPDI EVRVSDGNFM ISIYCKKQNG  240
IIKEIFNEVE KLHLSIISSS VMPFGYNTTH MTVIAQMDYK LSMTPNHVAN RIRAVMMKEE  300
DTIHTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131ERKRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-42bHLH family protein