PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT30587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 39679.7 Da PI: 7.8058 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.3e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++ +G +W+++++ g+ R++k+c++rw +yl OIT30587 13 RGLWSPEEDEKLTRHITTHGHSCWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.5e-16 | 66 | 108 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w+ OIT30587 66 RGCFSEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 108 899*******************.*********.***********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence |
MGHHCCSKQK VKRGLWSPEE DEKLTRHITT HGHSCWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGCFS EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSA IKKKLIAQGF 120 DPNTHNLLSR NHHQNNQIKS SCCKPKTCNH PNSTSVFTNL SSRKHVISMD IIKASLAASI 180 LPPIATTTTI TLPHSQTNPC KSSLTTTTYN YMNPICLPTT TNIENSNLAT IEYHQNQTSS 240 NNLLSSSSSL TPSGFGIIND NCMWDVEPQF NGKEEMQLVQ QQGAQLLQLQ ENICQEQVYK 300 VNHEFNNNGQ MAENVTFDNS NFDFEFVDSA LMPCEIYTNV NSIDQLAWDC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 1e-80 | MYB family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT30587 |