PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30498
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 294aa    MW: 33089.5 Da    PI: 10.4204
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30498genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.9e-14119163347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
         OIT30498 119 PWTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 163
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MGRKCSHCGI TGHNSRTCKP QKTKINEKNE APTSNIGMKL FGVKLEIPKS SSFASNISMK  60
KSFSVGCLSN SSKISSSTVG SFASNYKMFL DENLDYKVSN GYLSDELAGR TSDKKKGVPW  120
TEEEHRIFLV GLEKLGKGDW RGISRNFVTT RTPTQVASHA QKYFLRQNSL NRTKRRRSLF  180
DKVGMDKSTI LLFDKRVTKT KESTSISYEK SREDDETNIS MINFTTSSNK YSKSSSPQYS  240
MPTFNLPFIN SSDYISIQDS QKPDLELTLA VPRQLNNQRR KSSYLLAGNT ITVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174201KRRRSLFDKVGMDKSTILLFDKRVTKTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.18e-54MYB_related family protein