PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT30354 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 22527.4 Da PI: 6.8986 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.2 | 2.4e-37 | 10 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkC+++Cvla yfpa+qpkkf+n+h+lFG++n++k+l++l ++++ dam+s+++e+++r + P+yG+v+ il l+qql+ + +e +++ + OIT30354 10 ACAACKYQRRKCSQQCVLASYFPADQPKKFQNAHRLFGVRNIVKTLEQLdGDDQKADAMKSIIFESDMREKFPIYGCVECILYLRQQLQLALQEREYVYT 109 7************************************************445569**********************************99999888765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence |
MTKGETGRPA CAACKYQRRK CSQQCVLASY FPADQPKKFQ NAHRLFGVRN IVKTLEQLDG 60 DDQKADAMKS IIFESDMREK FPIYGCVECI LYLRQQLQLA LQEREYVYTQ LAIYRQQHLR 120 LSSSENNSVG NGIMTAPFFS SDSESSQGII YPDFDKHNSL AYPTSNHVFR LGSQEQQEVS 180 RDIESLTLFN SSLVDDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-34 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT30354 |