PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT30090
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 296aa    MW: 32607.4 Da    PI: 5.2797
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT30090genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.81.3e-36101012102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw+e+g++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+kell+ i+
      OIT30090  10 FLTKTYQLVDDATTDDVVSWNESGTTFVVWKTAEFAKDLLPTYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANENFKRGQKELLTAIR 97 
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
      OIT30090  98 RRKT 101
                   *986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MSQRTVPAPF LTKTYQLVDD ATTDDVVSWN ESGTTFVVWK TAEFAKDLLP TYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANENFKRGQK ELLTAIRRRK TVTSTPAGGK SVAPGTSASP  120
DNSGEDLGSS STSFPDSKNP GSVDTPGKSQ FADLSDENEK LKKDNQMLSS ELAQAKKQCD  180
ELVAFLNQYV KVAPDMISRI MSQGTSGSSH GELVKEVIGV VEDLEAQGSD DDQYDDEKGD  240
TLKLFGVLLK ENKKKRGPDD NADISGSRGK MVKTVDYNLP WMKMSSAPGE SNKVCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.17e-94HSF family protein