PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT30020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Whirly | ||||||||
Protein Properties | Length: 238aa MW: 26251.8 Da PI: 10.0101 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 193 | 4.4e-60 | 62 | 200 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101 sv k+kaal+ ++++ptf+ ldsg +kl+r+G ++l++ ++++erkydWek q falsatev++l+++++++sceffhdp++ +sn+G+vrk+l+ +P +d OIT30020 62 SVVKGKAALSAEPRLPTFSRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKGQLFALSATEVGSLISIGTRDSCEFFHDPSMLSSNAGQVRKSLSFKPNAD 162 799************************************************************************************************** PP Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 GsG+fv+lsv n+ +k+n++++vPv+ aefav+r++++ OIT30020 163 GSGYFVSLSVVNNNIKTNDRLTVPVTIAEFAVMRTAFS 200 ***********************************995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MHSEDKPSNM MNQLLHKRLP GEGVRDSIWQ HAINSLAGFS TVRQNIVADA GKLTGRVFAP 60 YSVVKGKAAL SAEPRLPTFS RLDSGGVKLN RRGVIMLTFW PSVGERKYDW EKGQLFALSA 120 TEVGSLISIG TRDSCEFFHD PSMLSSNAGQ VRKSLSFKPN ADGSGYFVSL SVVNNNIKTN 180 DRLTVPVTIA EFAVMRTAFS FALPHIVGWD RFTNQSSESV SQSPSKVVPQ LMEAEWDR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 2e-88 | Whirly family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT30020 |