PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OIT30000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 190aa MW: 21020.4 Da PI: 8.8539 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.4 | 5.9e-44 | 51 | 150 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasn++k+l+++p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la +++ OIT30000 51 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNISKMLQEVPVNKRADAVSSLVYEANARMRDPVYGCVGAISYLQNQVSHLQMQLAIAQAD 150 7**********************************************************************************************99875 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 190 aa Download sequence |
MKGLQNVVGK ESHGRCFKIK EPLQKVVVLL QYCVGEILNG NTSNIEPGNS PCASCKLLRR 60 RCAKDCIFAP YFPSDDPHKF AIVHKVFGAS NISKMLQEVP VNKRADAVSS LVYEANARMR 120 DPVYGCVGAI SYLQNQVSHL QMQLAIAQAD ILSSTNVISN SMNKIMYYSL KIRFINFSGE 180 DGDLVSQPSM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30130.1 | 5e-69 | LBD family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OIT30000 |