PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29598

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRF

Protein Properties

Length: 475aa MW: 51881.1 Da PI: 7.0008

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29598	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.3	2.7e-23	169	212	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rC+RtDGKkWRC r+v +++k+CErH h+++ rsrk++e OIT29598 169 DPEPWRCKRTDGKKWRCTRDVAPDQKYCERHAHKSKPRSRKPVE 212 79***************************************987 PP
2	QLQ	36.9	1.1e-13	110	145	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Qlq++ +Q + Ky++a++PvPp+Ll+++++ OIT29598 110 PFTASQLQEFQRQTIICKYIMASVPVPPQLLLPLSN 145 9********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MGNGENTELL DLKIKTTESS PSSYPYKRTM FMSPSSHPHF AAFDKETSSN STCLADDGGS 60 GGGGGGPWDF VGSDSYDAVS SGAAAALSSR PLQPFSCSAR GSMFLSGKAP FTASQLQEFQ 120 RQTIICKYIM ASVPVPPQLL LPLSNNPSSA HLPQSNTSGL DLKFSRGSDP EPWRCKRTDG 180 KKWRCTRDVA PDQKYCERHA HKSKPRSRKP VEIHNTTTNN SNNRHPPPTT TRNHHHSLQF 240 PTVQLSDQTR CIEWLGRGDR GGTIPIISCN QQNLQQLMQS SSGMGFNNDY TDQNRRNTPA 300 FQMQDEAKVY PMNNFNQYIS NRSNGQTLES TPLKNEECSG SVIASLQGRT TRDFIDAWSK 360 DGLNDGINNN GSFTSLTLSM SGWNHGMEED SEHAQASINR MLDSERSSDD VLRSQWLNPV 420 SWMSSTAPGG PLGEALCLGN ATNLPSPHGY SNSTANSSCS FNSCENGSHG LDFIG

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MGNGENTELL DLKIKTTESS PSSYPYKRTM FMSPSSHPHF AAFDKETSSN STCLADDGGS  60
GGGGGGPWDF VGSDSYDAVS SGAAAALSSR PLQPFSCSAR GSMFLSGKAP FTASQLQEFQ  120
RQTIICKYIM ASVPVPPQLL LPLSNNPSSA HLPQSNTSGL DLKFSRGSDP EPWRCKRTDG  180
KKWRCTRDVA PDQKYCERHA HKSKPRSRKP VEIHNTTTNN SNNRHPPPTT TRNHHHSLQF  240
PTVQLSDQTR CIEWLGRGDR GGTIPIISCN QQNLQQLMQS SSGMGFNNDY TDQNRRNTPA  300
FQMQDEAKVY PMNNFNQYIS NRSNGQTLES TPLKNEECSG SVIASLQGRT TRDFIDAWSK  360
DGLNDGINNN GSFTSLTLSM SGWNHGMEED SEHAQASINR MLDSERSSDD VLRSQWLNPV  420
SWMSSTAPGG PLGEALCLGN ATNLPSPHGY SNSTANSSCS FNSCENGSHG LDFIG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	2e-26	GRF family protein

Link Out ? help Back to Top
Ensembl	OIT29598