PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29588

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ARF

Protein Properties

Length: 653aa MW: 72816.2 Da PI: 6.4747

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29588	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.9	7.9e-23	127	227	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++ +++a+e+ ++++ + +l+ d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F + +++el+v OIT29588 127 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQQPPWQ--ELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGENGELRV 223 99**************************975444444..8********************************************..449999* PP EEE- CS B3 95 kvfr 98 +v+r OIT29588 224 GVRR 227 **97 PP
2	Auxin_resp	116.3	2.7e-38	253	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv + ++rWp+S+WrsLk OIT29588 253 ASHAISTGTLFSVYYKPRTSQSEFIVSVNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGENTSSRWPDSEWRSLK 335 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence
MAHLAANHFG GEAHPVAPND ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTH 60 QGLDQQLPSF NLPAKILCKV MNIQLRAESE TDEVYAQITL LPEPDQGEIT RPYPPLPEPQ 120 KCTVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMTQ QPPWQELVAS DLHGNEWHFR 180 HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE LRVGVRRLMR QLNNMPSSVI 240 SSHSMHLGVL ATASHAISTG TLFSVYYKPR TSQSEFIVSV NKYLEARNHK LSVGMRFKMR 300 FEGEEVPERR FSGTIVGVGE NTSSRWPDSE WRSLKVHWDE PSSILRPDRV SPWEIEPLVT 360 ATPTNTQPPQ RNKRARPSVL PSPVQELPAL GMWKSPGDSP SSFPYCDPSR GRDLYASPKL 420 SAASGLGYGE NGSMPLSSKS MYWSSQSDTC TESITPASEK RPANGYRLFG IELLDRPTVD 480 EASPVAMPSA LVENQPAASL DVDSGNSEPS NPIPSVSCEP EKSSLRSPHE SQSKQIRSCT 540 KVHMQGKAVG RAVDLTRLDS YEDLLKKLEE MFEIEGELRD STKKWQVVYT DDEDDMMMVG 600 DDPWHEFCSM VRKIYVYTAE EAKKLSPKIK LPVDDVKPGK PVSGATVSNE EKA

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence

MAHLAANHFG GEAHPVAPND ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTH  60
QGLDQQLPSF NLPAKILCKV MNIQLRAESE TDEVYAQITL LPEPDQGEIT RPYPPLPEPQ  120
KCTVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMTQ QPPWQELVAS DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE LRVGVRRLMR QLNNMPSSVI  240
SSHSMHLGVL ATASHAISTG TLFSVYYKPR TSQSEFIVSV NKYLEARNHK LSVGMRFKMR  300
FEGEEVPERR FSGTIVGVGE NTSSRWPDSE WRSLKVHWDE PSSILRPDRV SPWEIEPLVT  360
ATPTNTQPPQ RNKRARPSVL PSPVQELPAL GMWKSPGDSP SSFPYCDPSR GRDLYASPKL  420
SAASGLGYGE NGSMPLSSKS MYWSSQSDTC TESITPASEK RPANGYRLFG IELLDRPTVD  480
EASPVAMPSA LVENQPAASL DVDSGNSEPS NPIPSVSCEP EKSSLRSPHE SQSKQIRSCT  540
KVHMQGKAVG RAVDLTRLDS YEDLLKKLEE MFEIEGELRD STKKWQVVYT DDEDDMMMVG  600
DDPWHEFCSM VRKIYVYTAE EAKKLSPKIK LPVDDVKPGK PVSGATVSNE EKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OIT29588