PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29517

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 358aa MW: 40489.1 Da PI: 8.0368

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29517	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.1e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ f+ G C G+ C F+H+ OIT29517 3 KRVLCK-FFVHGACLKGEYCEFSHD 26 99**.7777***********5 PP
2	zf-CCCH	23	1.3e-07	36	56	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ++++ G C yG+rC++ H+ OIT29517 36 VCTYYQK-GLCAYGSRCRYEHV 56 6****.*********997 PP
3	zf-CCCH	21.8	3.3e-07	141	161	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ a+ G C++G++C+++Hg OIT29517 141 ICS-LAAAGNCPRGEKCTYIHG 161 677.8999*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MSKRVLCKFF VHGACLKGEY CEFSHDWKDP PNNLQVCTYY QKGLCAYGSR CRYEHVKVSQ 60 PHSSPSSSAP AQHLLSDPSP TTLSPGMLAD GAGLSAEYLT SGRPFYPPNQ AARSENSEHH 120 HVEEIENFVE LKRINPANQS ICSLAAAGNC PRGEKCTYIH GDLCPICAKH CLHPFRPQER 180 EEHMKTCEKR QKHLDLLKHS QEIECCVCLE RVLSKTTAAE RKFGILSECD HPFCISCIRN 240 WRSGSPSSGI DINSTFRTCP VCRKLSYFVI PSVIWYSTKE EKQDILDSYK AKLRSIDCKH 300 FDFGNGTCPF GASCFYKHQY RDGRLEEVVL RHLGSEDGST VVAKNIRLSD FLSNLRIR

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MSKRVLCKFF VHGACLKGEY CEFSHDWKDP PNNLQVCTYY QKGLCAYGSR CRYEHVKVSQ  60
PHSSPSSSAP AQHLLSDPSP TTLSPGMLAD GAGLSAEYLT SGRPFYPPNQ AARSENSEHH  120
HVEEIENFVE LKRINPANQS ICSLAAAGNC PRGEKCTYIH GDLCPICAKH CLHPFRPQER  180
EEHMKTCEKR QKHLDLLKHS QEIECCVCLE RVLSKTTAAE RKFGILSECD HPFCISCIRN  240
WRSGSPSSGI DINSTFRTCP VCRKLSYFVI PSVIWYSTKE EKQDILDSYK AKLRSIDCKH  300
FDFGNGTCPF GASCFYKHQY RDGRLEEVVL RHLGSEDGST VVAKNIRLSD FLSNLRIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-151	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT29517