PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT29486
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 697aa    MW: 76601.6 Da    PI: 6.9888
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT29486genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23122223199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++ l+v
  OIT29486 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAENGDLCV 218
               89****************************996555555..89***********************************************..4488999** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +++r+
  OIT29486 219 GIRRA 223
               **997 PP
2Auxin_resp112.15.2e-37289372183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+++++Fev+Y+Prast+eF++k++ v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
    OIT29486 289 AASFAASGQPFEVIYYPRASTPEFCIKASLVKSALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPMRWPDSPWRLLQ 372
                 6778999***************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    
MITFMDPKDK VKEIDKCLDS QLWHACAGSM VQMPPISSKV FYFPQGHSEH ACGNVDFRSS  60
NIRIPSYVPC KVSAIKYMAD PETDEVFAKI RLIPVSRSEV EFDDDGVVGM NGSDNQDKPT  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG  180
TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PETSSGWNPA  240
GGNCMVPYGG FSSFLREDEN KLMRNGGNGN SSGNLMNRGK VKAESVIEAA SFAASGQPFE  300
VIYYPRASTP EFCIKASLVK SALQIRWCSG MRFKMPFETE DSSRISWFMG TISSVQVADP  360
MRWPDSPWRL LQVTWDEPDL LQNVKRVSPW LVELVSNMPT IHLSPFSPPR KKLRLPQHPD  420
FPLDGHHLPM PAFSGNHLLG PSSPFGCLPD NTPAGMQGAR HAQYGLSLSD IHLNKLHSSL  480
FPVGFPPLDQ AAAHPRPPNS PMIRKPCNSE NISCLLTMGN STQDTTKKSD IGKAPQLVLF  540
GQPILTEQQI SLSCSGDTVS TVRTGNSSSD GNADKIGNVS DGSGSALNQR GLTESSPRDT  600
FQSEPNTEIG HCKVFMESED VGRTLDLSSI GSYEELCRKL ANMFGIENSE ILSHVLYRDI  660
TGTVKQLGDE PYSDFIRTAR RLTILTDSSS DNVGLRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein