PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29482

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CPP

Protein Properties

Length: 719aa MW: 79042.3 Da PI: 7.1906

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29482	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	23.9	8.5e-08	255	289	7	42
TCR 7 nCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +C+k ++YCeCfa+g +C+ C+C +C+N+ e+ OIT29482 255 KCNKLGTYNLYCECFASGIYCDG-CNCVNCHNNVEN 289 7999999**************.******9875 PP
2	TCR	50.6	3.9e-16	334	373	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e OIT29482 334 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 373 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MFFFHGDLED EVYMVQPSGF ITQGESSGLV CRLCRSLYGL KQSTRAWFCK FNTVIQEFGM 60 ICSEVDHSVF IGILLQISVF IWWCMLMILL LPAMIRMSSS GTVISQWKYA LDILEETGMI 120 GCRPVDTPMD PNSKLLPGQG GNLVSWKSKK QNVVAWSSAE AKYRAMAVAT CELHLLKELK 180 CSEISKMKLV CDNQAVLHIA SNPVFHDITK HIEIDSHFIR EKILSGDIAA KFVKSNDQFA 240 DIFTTSLTGP RICYKCNKLG TYNLYCECFA SGIYCDGCNC VNCHNNVENE PARREAVEAT 300 LERNPHAFRP KIASSPHGVR ENREEAGDGL VLPKHNKGCH CKKSGCLKKY CECFQANILC 360 SENCKCMDCK NFEGSQERQA LFHGDHANNM AYLQQAANAA ITGAIGSSGY GSPPVNKKRK 420 AQELFFGSMI KDPVHRLGQL QQESQIKVSV PPSPLSSIPG PRVGNAAALS PSKFTYRSLL 480 ADLIHPHDIK ELCSVLVDYA WEAGKMLADE RDASLKQAKC HSEASYPSSG VEKVIPDDCS 540 SAVRAENIDE SSLDSANVPK ERPMSPGTLA LMCDEQNTIF TAAAAPPNDR TSLSNNTSSQ 600 LPHGQGMKEV YPELEKIVLT RTRDCLKKLI TLGELKETKC SSMVRGADSG SQNEVNGNGI 660 AMTDSRNQHE PFRNSLANSV PTPPPPPPQK VEPGTTAFSN NPCPKVHPPD ENGDVKSKS

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MFFFHGDLED EVYMVQPSGF ITQGESSGLV CRLCRSLYGL KQSTRAWFCK FNTVIQEFGM  60
ICSEVDHSVF IGILLQISVF IWWCMLMILL LPAMIRMSSS GTVISQWKYA LDILEETGMI  120
GCRPVDTPMD PNSKLLPGQG GNLVSWKSKK QNVVAWSSAE AKYRAMAVAT CELHLLKELK  180
CSEISKMKLV CDNQAVLHIA SNPVFHDITK HIEIDSHFIR EKILSGDIAA KFVKSNDQFA  240
DIFTTSLTGP RICYKCNKLG TYNLYCECFA SGIYCDGCNC VNCHNNVENE PARREAVEAT  300
LERNPHAFRP KIASSPHGVR ENREEAGDGL VLPKHNKGCH CKKSGCLKKY CECFQANILC  360
SENCKCMDCK NFEGSQERQA LFHGDHANNM AYLQQAANAA ITGAIGSSGY GSPPVNKKRK  420
AQELFFGSMI KDPVHRLGQL QQESQIKVSV PPSPLSSIPG PRVGNAAALS PSKFTYRSLL  480
ADLIHPHDIK ELCSVLVDYA WEAGKMLADE RDASLKQAKC HSEASYPSSG VEKVIPDDCS  540
SAVRAENIDE SSLDSANVPK ERPMSPGTLA LMCDEQNTIF TAAAAPPNDR TSLSNNTSSQ  600
LPHGQGMKEV YPELEKIVLT RTRDCLKKLI TLGELKETKC SSMVRGADSG SQNEVNGNGI  660
AMTDSRNQHE PFRNSLANSV PTPPPPPPQK VEPGTTAFSN NPCPKVHPPD ENGDVKSKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-135	CPP family protein

Link Out ? help Back to Top
Ensembl	OIT29482