PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29420

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 817aa MW: 92896.1 Da PI: 7.5231

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29420	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.5	3.9e-22	74	155	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y+eYA+++GF +++++s++sk++g++++ + Cs+ g ++e+ ++ r+ +t+Cka+++vk+++d+kw+++++++eHnHe++ OIT29420 74 LYKEYARSLGFGITIKASRRSKKSGKFIDVKIACSRFGAKRESGSS-------RSCPKTDCKASVHVKRRQDEKWYIYSFVKEHNHEIC 155 7*************************************998877.......9999****************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence
MEIDLELDVY MGKNAIDDSS QSHAGVEYVK ENVEKSGDAI GMDVVDVDII DKGVGNNEPQ 60 KGMEFETKEA AYSLYKEYAR SLGFGITIKA SRRSKKSGKF IDVKIACSRF GAKRESGSSR 120 SCPKTDCKAS VHVKRRQDEK WYIYSFVKEH NHEICSDDFY CSVRGRSKQS ANVVYQKKGL 180 QLALNEGDVE VLLDTLALMQ AEGPNSYYAI DFDKEKRMRN VFWVDAKGRN DYGHFCDVIY 240 LDTYYIRNKY KVPFIPIVGV NHHFQFLLLG CALVGDETSS TFAWLLRTWL RAVGGQSPRV 300 VITDDDTSVK EAVEEVFPEA RHCFCLSHVM EKVSQDLGNK ISKIEDFVDK LKKCMWLPLK 360 EEEFEKRWWE MVDTFKLRDD DLIRSLFENR TKWVPVYMRN TFLAALSTVE RSECVSSSFE 420 RYISSETTFK EFNDGYKLFV HDMYEEEAKA DIETRHRPPT IKTLSPYEKQ MSTVYTNSLF 480 MKFQAEVLGV AACTILNEGE EGTEKLYRVK DRDKHQSFMV SWSGRESYIV CSCRSFEYIG 540 ILCRHAITVL QVNGVPNIPP VYIIKRWTRE AKIKGRTCRI SSTPCYRIQR LNDLCKLSAK 600 FGEVGSLSQE TYESAVYAIQ AAMQDCVNVN NSVKSALVSN ISSSQCNPNV DEEIQGGSMA 660 KSSKRKKVQK KRKVQYNGEV LSSRIQDNSL QMDQSNSKMP TNEDAFLAQR HVQGMDPGSR 720 VATIDGHYAH HSIHGLGQLS SFSMLRDNYY SNHQASHRVL GNLNYISAHG GHYSPQGFQG 780 PGQLSFKAPL LHTSFDIQGN SSDMDNPTSV TGKHLQD

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence

MEIDLELDVY MGKNAIDDSS QSHAGVEYVK ENVEKSGDAI GMDVVDVDII DKGVGNNEPQ  60
KGMEFETKEA AYSLYKEYAR SLGFGITIKA SRRSKKSGKF IDVKIACSRF GAKRESGSSR  120
SCPKTDCKAS VHVKRRQDEK WYIYSFVKEH NHEICSDDFY CSVRGRSKQS ANVVYQKKGL  180
QLALNEGDVE VLLDTLALMQ AEGPNSYYAI DFDKEKRMRN VFWVDAKGRN DYGHFCDVIY  240
LDTYYIRNKY KVPFIPIVGV NHHFQFLLLG CALVGDETSS TFAWLLRTWL RAVGGQSPRV  300
VITDDDTSVK EAVEEVFPEA RHCFCLSHVM EKVSQDLGNK ISKIEDFVDK LKKCMWLPLK  360
EEEFEKRWWE MVDTFKLRDD DLIRSLFENR TKWVPVYMRN TFLAALSTVE RSECVSSSFE  420
RYISSETTFK EFNDGYKLFV HDMYEEEAKA DIETRHRPPT IKTLSPYEKQ MSTVYTNSLF  480
MKFQAEVLGV AACTILNEGE EGTEKLYRVK DRDKHQSFMV SWSGRESYIV CSCRSFEYIG  540
ILCRHAITVL QVNGVPNIPP VYIIKRWTRE AKIKGRTCRI SSTPCYRIQR LNDLCKLSAK  600
FGEVGSLSQE TYESAVYAIQ AAMQDCVNVN NSVKSALVSN ISSSQCNPNV DEEIQGGSMA  660
KSSKRKKVQK KRKVQYNGEV LSSRIQDNSL QMDQSNSKMP TNEDAFLAQR HVQGMDPGSR  720
VATIDGHYAH HSIHGLGQLS SFSMLRDNYY SNHQASHRVL GNLNYISAHG GHYSPQGFQG  780
PGQLSFKAPL LHTSFDIQGN SSDMDNPTSV TGKHLQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.2	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OIT29420