PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT29347
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 464aa    MW: 51029.7 Da    PI: 8.4417
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT29347genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17159208155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  OIT29347 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 208
               78*******************......55************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    
MLDLNVSAVS VNSNCDETDP NNNNTLFFKD EYSAGTSNTT ASSSVVNAPV AGDEDSNSSS  60
VHHGSKRAHH TLNFSILKSD RAIEIEDDMS TDDVLTRQLF PVKNESQVQG QGTRIQGQSQ  120
CWLNLSVPES GGGAEIGIYK PPAQQPVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHAAARAYD RAAIKFRGVD ADINFNITDY EEDMEQMKNL SKEEFVQVLR  240
RQSTGFSRGN SKYRGVTLQK CGRWDARMGQ FLGKKAYDKA AIKCNGREAL TNFEPNTYER  300
DIKEDNKDGG SGQNLDLNLW ISPPLAGPKR DEIGRNVPFN FGAREMVIGR RLEIENSSTA  360
PQGAPTASKL SLLTGVYPGF SPHNMEGAMA KVEATSSPGF PNWAWKIHSQ GLVTPVPVFS  420
SSAASSGFST ATTQYPNTLL LPSNQLRLPT NSTFQHPPVT LNIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.23e-86AP2 family protein