PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT29056

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ARF

Protein Properties

Length: 671aa MW: 76401.4 Da PI: 5.8004

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT29056	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.8	8.4e-23	125	224	1	97
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kvlt sd+ ++ l++p k a ++ + +k+ + +l+++d+sg++W++k+ + ++++r++lt+GW+ Fv++++L +gD vvF +++++ +v+ OIT29056 125 FCKVLTASDTKSNWGLSIPQKDAVKCfplldmSRDKPIQ-ELVVKDLSGKEWRFKHVFGGHPRRHLLTNGWSAFVNSKKLVSGDLVVFL--REENGDVHVG 222 99**************************995555564.9**********************************************..4467767888 PP EE CS B3 96 vf 97 ++ OIT29056 223 FR 224 76 PP
2	Auxin_resp	34.5	8.7e-13	250	303	1	56
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse 56 a++a++++ +F+v+ +P++ s+F+++++k+++a+++ ++v m fkm e +s+e OIT29056 250 ASDALASQRPFSVYCKPQT--SQFIISLNKYLEAINRGLCVSMTFKMPSEVVNSHE 303 567899*********95..9***********************999877766 PP

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence
MWSSHPKKQN HVTSKGDDDL YRELWKAFAG QFMDVPRVGE QVYYFPGLHI KQLEQSTNQE 60 LNQGTPISDP YFKILCHVVH VRFLVENISE EVYAEINLLP KHDQTEPVNP DFYHSEIPRP 120 QIRSFCKVLT ASDTKSNWGL SIPQKDAVKC FPLLDMSRDK PIQELVVKDL SGKEWRFKHV 180 FGGHPRRHLL TNGWSAFVNS KKLVSGDLVV FLREENGDVH VGFRHLLCEK SSVEAPIASS 240 LDIKGVLAVA SDALASQRPF SVYCKPQTSQ FIISLNKYLE AINRGLCVSM TFKMPSEVVN 300 SHESFTCMTN EKDQMHQFSQ NTNVFLNEDE EHMEDAEAIV YSPPQNSMTP SGIGEKRHSD 360 HTVYISPLEG NVESNCGTRK HNEVSNPVEI ESIRGTEEPK AITSSTWDFN PIQEQELEDA 420 EIIKDILPIV SQNLPLDYTV SSNTDNDHFL PIMQDSEEWQ NFQGTDFPLH VQSPSGNHNI 480 QNLSNKDQQN SSKAMHPTSI SSQIPYDGPG HADERVHWEG YHVARRYISI LNRIILQYPS 540 TLSSFKATSP IFQTMCLEIL AELVYLLGQF TTANMDIKYL SEAKRYLRDL KLSGIEIGWL 600 EKRLAKVEDI FTMKRISIRR QELVLGIEDT TATLRLMNEE LGSLEKELQK LSSNINLKTP 660 AEHHPILEGL L

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence

MWSSHPKKQN HVTSKGDDDL YRELWKAFAG QFMDVPRVGE QVYYFPGLHI KQLEQSTNQE  60
LNQGTPISDP YFKILCHVVH VRFLVENISE EVYAEINLLP KHDQTEPVNP DFYHSEIPRP  120
QIRSFCKVLT ASDTKSNWGL SIPQKDAVKC FPLLDMSRDK PIQELVVKDL SGKEWRFKHV  180
FGGHPRRHLL TNGWSAFVNS KKLVSGDLVV FLREENGDVH VGFRHLLCEK SSVEAPIASS  240
LDIKGVLAVA SDALASQRPF SVYCKPQTSQ FIISLNKYLE AINRGLCVSM TFKMPSEVVN  300
SHESFTCMTN EKDQMHQFSQ NTNVFLNEDE EHMEDAEAIV YSPPQNSMTP SGIGEKRHSD  360
HTVYISPLEG NVESNCGTRK HNEVSNPVEI ESIRGTEEPK AITSSTWDFN PIQEQELEDA  420
EIIKDILPIV SQNLPLDYTV SSNTDNDHFL PIMQDSEEWQ NFQGTDFPLH VQSPSGNHNI  480
QNLSNKDQQN SSKAMHPTSI SSQIPYDGPG HADERVHWEG YHVARRYISI LNRIILQYPS  540
TLSSFKATSP IFQTMCLEIL AELVYLLGQF TTANMDIKYL SEAKRYLRDL KLSGIEIGWL  600
EKRLAKVEDI FTMKRISIRR QELVLGIEDT TATLRLMNEE LGSLEKELQK LSSNINLKTP  660
AEHHPILEGL L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46530.1	2e-88	ARF family protein

Link Out ? help Back to Top
Ensembl	OIT29056