PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT29007
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 300aa    MW: 33305.3 Da    PI: 10.5379
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT29007genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.8e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v+++G+g W+tI +          R+  ++k++w++
         OIT29007  5 KQKWTPEEEAALKAGVRKHGPGKWRTILKDPEfsgvlRLRSNVDLKDKWRN 55
                     79***********************************99***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MGAPKQKWTP EEEAALKAGV RKHGPGKWRT ILKDPEFSGV LRLRSNVDLK DKWRNMSVMA  60
NGWGSREKAR LALKRMNQTR KQDESLVVTI ESQSDEEIVE ARLATTSSGS PQIGGSKRSI  120
IRLDNLIMEA ISNLKEPGGS NKTTIATYIE DQYWAPPNFK RLLSAKLKYL TATGRLIKVK  180
RKYRIALMSA LSDRRRMPSI PLLESAQRIS NRVDRDDMNM RTTKAQVDLE LATMRSMTLQ  240
EAAAAAAQAV AEAEAAIEEA EEAARVAEAA EAEAEAAQAF AKAAMRTLQG RSIPRMMIHA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.19e-99MYB_related family protein