PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT28936

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 516aa MW: 57025.9 Da PI: 6.5667

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT28936	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.8	1.5e-30	284	342	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ OIT28936 284 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILTTTYEGTHNHP 342 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MDKAGWGLTL ENISEHQVGF FKNKPVYGFN LSPRLNNMNM NPREEQASFS SADEKRVMLN 60 EVDFFSDKRI MPMDVVIKKE DSHGENTTST RSELLVNTGL QLVSVNTGSD QSTVDDGISS 120 EIEDKRAKIE LAQLQVELGR MNAENQRLRE MLTQVSNNYT ALQMHLVTLM QQQQQNISRT 180 QNDHEIVEAK HEEKDGNMVP RQFLELGPND EPYSLNSHYS SSEERTVSES PRNKGIGREE 240 TPESESNKVP KLNSSNPIDQ ATDQATMRKA RVSVRARSEA PMISDGCQWR KYGQKMAKGN 300 PCPRAYYRCT MAVGCPVRKQ VQRCAEDRTI LTTTYEGTHN HPLPPAAMAM ASTTSAAANM 360 LLSGPMPSAD GLMNPNFIAR TILPCSPSVA TISASAPFPT ITLDLTQNQN SLSPYHQRTH 420 PTAQFQVPFP IGPHNPNFIT SMPPPPMPQS LHNQSKFSGL QVSQDIHHQP PQHALNQPSF 480 SDTLNAATAA ITADPNFTAA LAAAISSIIT GSQKEQ

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MDKAGWGLTL ENISEHQVGF FKNKPVYGFN LSPRLNNMNM NPREEQASFS SADEKRVMLN  60
EVDFFSDKRI MPMDVVIKKE DSHGENTTST RSELLVNTGL QLVSVNTGSD QSTVDDGISS  120
EIEDKRAKIE LAQLQVELGR MNAENQRLRE MLTQVSNNYT ALQMHLVTLM QQQQQNISRT  180
QNDHEIVEAK HEEKDGNMVP RQFLELGPND EPYSLNSHYS SSEERTVSES PRNKGIGREE  240
TPESESNKVP KLNSSNPIDQ ATDQATMRKA RVSVRARSEA PMISDGCQWR KYGQKMAKGN  300
PCPRAYYRCT MAVGCPVRKQ VQRCAEDRTI LTTTYEGTHN HPLPPAAMAM ASTTSAAANM  360
LLSGPMPSAD GLMNPNFIAR TILPCSPSVA TISASAPFPT ITLDLTQNQN SLSPYHQRTH  420
PTAQFQVPFP IGPHNPNFIT SMPPPPMPQS LHNQSKFSGL QVSQDIHHQP PQHALNQPSF  480
SDTLNAATAA ITADPNFTAA LAAAISSIIT GSQKEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-129	WRKY family protein

Link Out ? help Back to Top
Ensembl	OIT28936