PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT28926

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 1001aa MW: 110988 Da PI: 7.4522

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT28926	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.1	1.4e-39	151	228	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ OIT28926 151 CCQVQDCRADLSNAKDYHRRHKVCDVHSKAAKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 228 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence
MDAHNYHGPV SGKKSNEWDS INWTWDGDLF TAERRNNNSL PSDCCKSKQL MFPIGSEIHP 60 EASRISNCFS SGSDELLTLG SNDKGRKELE KRRRAIVIED DELDNEEEAG SLNLKLGGQL 120 YPVMEGDEEK LEGKSGKKTK IVGVSSNRAV CCQVQDCRAD LSNAKDYHRR HKVCDVHSKA 180 AKALVGNVMQ RFCQQCSRFH VLQEFDEGKR SCRRRLAGHN RRRRKTHPEN VANGASMNDE 240 GGINYLLISL LRILTNVQSN SSDQTKDQDL LSHLMRNLAS LAGATNERNT SGLLSAPPEQ 300 RNVGTSMGAP KEDSLRPTGN CLIPASEVTE KRMGRSDVEY GISQNPCAWQ PHSLCCRKES 360 SPINANASAK VKLNNIDLNN IYDDSQDGNQ KLQNSDASAN PGAASSGCPL WICHDPHKSS 420 PGTSGNSGST SSLSLSNSSG EAQSRTDRIV FKLFGKDPGD FPTALRKQIL DWLSHSPTDI 480 ESYIKPGCII LTIYLRMDKS IWEELYCDLN SSLRKLLNAS ADSFWQTGWV YARVNDRVAF 540 LFNGQVVLDT SLPVKSHRSC GISIVKPIAV CASERVQFLV KGVNLSRPTT RLLCALEGNY 600 LVQGNCTDMM VGADSCMDHE DIQSLSFPCI LPNVTGRGFI EVEDHGLSSN FFPFIVAEKD 660 VCSEIRTLES NIEVAEMAGG FLQGTENLQA REQALEFLHE MGWLLHRSHL KFRVGSGVNL 720 NLFPFQRFKW LIEFSIDQDW CAVVKKLLDV FFNGIVDVGQ QSSLDIPLRE VGILHQAVRR 780 KCRSMVEVLL KYRPHGAFDK SGLQKKQDDR DYLFRPDAVG PGGLTPLHLV ASLAGFENIL 840 DALIDDPGQV GIEAWKSACD STGLTPNDYA CLRGHYSYIH IVQKKISQKP GDGHVVLDIP 900 GSLLDSSITQ KLSDGHRSVK VASLQTEKSL RKPIQTHCRQ CDQKLYYGNS GSSLAIYKPA 960 MLSMVAIATI CVCVALLFKS SPEVLYSFRP FRWELLKYGS I

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence

MDAHNYHGPV SGKKSNEWDS INWTWDGDLF TAERRNNNSL PSDCCKSKQL MFPIGSEIHP  60
EASRISNCFS SGSDELLTLG SNDKGRKELE KRRRAIVIED DELDNEEEAG SLNLKLGGQL  120
YPVMEGDEEK LEGKSGKKTK IVGVSSNRAV CCQVQDCRAD LSNAKDYHRR HKVCDVHSKA  180
AKALVGNVMQ RFCQQCSRFH VLQEFDEGKR SCRRRLAGHN RRRRKTHPEN VANGASMNDE  240
GGINYLLISL LRILTNVQSN SSDQTKDQDL LSHLMRNLAS LAGATNERNT SGLLSAPPEQ  300
RNVGTSMGAP KEDSLRPTGN CLIPASEVTE KRMGRSDVEY GISQNPCAWQ PHSLCCRKES  360
SPINANASAK VKLNNIDLNN IYDDSQDGNQ KLQNSDASAN PGAASSGCPL WICHDPHKSS  420
PGTSGNSGST SSLSLSNSSG EAQSRTDRIV FKLFGKDPGD FPTALRKQIL DWLSHSPTDI  480
ESYIKPGCII LTIYLRMDKS IWEELYCDLN SSLRKLLNAS ADSFWQTGWV YARVNDRVAF  540
LFNGQVVLDT SLPVKSHRSC GISIVKPIAV CASERVQFLV KGVNLSRPTT RLLCALEGNY  600
LVQGNCTDMM VGADSCMDHE DIQSLSFPCI LPNVTGRGFI EVEDHGLSSN FFPFIVAEKD  660
VCSEIRTLES NIEVAEMAGG FLQGTENLQA REQALEFLHE MGWLLHRSHL KFRVGSGVNL  720
NLFPFQRFKW LIEFSIDQDW CAVVKKLLDV FFNGIVDVGQ QSSLDIPLRE VGILHQAVRR  780
KCRSMVEVLL KYRPHGAFDK SGLQKKQDDR DYLFRPDAVG PGGLTPLHLV ASLAGFENIL  840
DALIDDPGQV GIEAWKSACD STGLTPNDYA CLRGHYSYIH IVQKKISQKP GDGHVVLDIP  900
GSLLDSSITQ KLSDGHRSVK VASLQTEKSL RKPIQTHCRQ CDQKLYYGNS GSSLAIYKPA  960
MLSMVAIATI CVCVALLFKS SPEVLYSFRP FRWELLKYGS I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein

Link Out ? help Back to Top
Ensembl	OIT28926