PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT28910

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 358aa MW: 37907.2 Da PI: 5.0926

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT28910	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.5	3.9e-37	89	186	2	99
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskk 99 +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ +++ + + ++ + ++ ++a++++ OIT28910 89 PPAKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsVNGTLKIPTTSPATN-SEGESATKRR 186 6799************************************************************777774442111111111111111.1111111111 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MENKQNIEPE NDAVNDSKIL SADPLLGDSE EYTITAVGQH VTDAEGVGPS PPPSTDIVPL 60 LKEEPAENDL RGGTMSDGLN MQLQKVEKPP AKRSSKDRHT KVEGRGRRIR MPAACAARIF 120 QLTRELGHKS DGETIRWLLE RAEPAIIEAT GTGTVPAIAV SVNGTLKIPT TSPATNSEGE 180 SATKRRKRAA NSEFYDVHEP SNFAPVAPIA PQSLLPVWAV ASGNGLVPTT SGTTFFMVQP 240 PPTSSTTIAT AGPSYPPQLW ATPIYNIPGR PISNYVSGIS YAGVSAAEGQ VSSSKSDGNV 300 SAMAPSSSST GVTTTTTTSN TTTQMLRDFS LEIYDKRELQ FMVGSGSSEN DQTSSSKS

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MENKQNIEPE NDAVNDSKIL SADPLLGDSE EYTITAVGQH VTDAEGVGPS PPPSTDIVPL  60
LKEEPAENDL RGGTMSDGLN MQLQKVEKPP AKRSSKDRHT KVEGRGRRIR MPAACAARIF  120
QLTRELGHKS DGETIRWLLE RAEPAIIEAT GTGTVPAIAV SVNGTLKIPT TSPATNSEGE  180
SATKRRKRAA NSEFYDVHEP SNFAPVAPIA PQSLLPVWAV ASGNGLVPTT SGTTFFMVQP  240
PPTSSTTIAT AGPSYPPQLW ATPIYNIPGR PISNYVSGIS YAGVSAAEGQ VSSSKSDGNV  300
SAMAPSSSST GVTTTTTTSN TTTQMLRDFS LEIYDKRELQ FMVGSGSSEN DQTSSSKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	6e-68	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT28910