PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT28825

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CPP

Protein Properties

Length: 958aa MW: 103392 Da PI: 6.5375

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT28825	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.3	1.9e-15	539	577	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YC+Cfaag +C+ +C C++C+N+ e OIT28825 539 CKRCNCKKSKCLKLYCDCFAAGIYCAGSCACQGCFNRVE 577 79**********************************876 PP
2	TCR	48.5	1.7e-15	626	664	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gC+Ckks ClkkYCeC++a++ Cs+ C+Ce+CkN OIT28825 626 RHKRGCSCKKSMCLKKYCECYQANVGCSSGCRCEGCKNV 664 589***********************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 958 aa Download sequence
MDSPEPSSKT ATINSTINPT PAEDSPVFSY LSNLSPIQPV KAAPVVQGFP GLNSPPLLFT 60 SPRVSAHSRL RRSQFPQLSS EAFSGKNEDY NNAITDSDAN GVSVSQLRSE LSASVQKVSY 120 NNISVPDESG SLIRCVDEYL VDVSNSESSN PSNSTNPSPK VADNIPQSPN SAAESVADFA 180 SKDARKDEIP KDAARVVVEQ VEEENKGKSS SDQKDNGIYS TSTDSDLPSP DLCTKIEPDL 240 PADSLHYHYS DRQMSQLSSA DHAMLDEASD IQTKPLETAH DCRNDNDKIN SMSSAPDECI 300 MQHDSQTKAG QHQSGIRRRC LQFEDAQRKI SPTSLGLQNT SGVVSCSIPP VSPAVIEVVA 360 SVSSDRSSTA SNRPSTQLTS SSDNFESFAV KVPMPSGIGL HLNSIAMQAG SRAIVSVKSA 420 ERGNLSIPGK KLTSMMSPHP SENLKSCSIS SNVVGSHLTS GDNDGDHESY GTNAESAASL 480 HLNDAKPLNN TVLLKPTEHT LSHKRKSSSE YIDSPMNYNQ SSPKKKRKKI SDGYDGDGCK 540 RCNCKKSKCL KLYCDCFAAG IYCAGSCACQ GCFNRVEYED TVNDVRQQIQ SRNPLAFCPK 600 IVQHPTDSPA SILGVEGASF TPPSARHKRG CSCKKSMCLK KYCECYQANV GCSSGCRCEG 660 CKNVYGLKEE YGKDLVKKHC ITERLEKSVE EKVEMVTATS GLLQIDPRNQ CNLTPPTPSF 720 QCSNRGKNAS KSWFTSGRYL SSPESGQAIY GLSPASPTSS KNHDIDQETT GDIMDLVTFD 780 QEFNYGNAKL ANEFSPGFHV IGNTDDLLAL PKSQDLASNT GGQLIPQTVN FQSTWPLSWR 840 DSPITPMNQF DGSGMNALEL LNSDKKPYAM EDDTPEILKD SSMPQTGVKV SSPNKKRISP 900 PNRHLNELGS SSSGGGFKTG RKFILRAVPS FPPLTPCIDS KDVATHSADN SQKCSSGK

Sequence ? help Back to Top

Protein Sequence Length: 958 aa Download sequence

MDSPEPSSKT ATINSTINPT PAEDSPVFSY LSNLSPIQPV KAAPVVQGFP GLNSPPLLFT  60
SPRVSAHSRL RRSQFPQLSS EAFSGKNEDY NNAITDSDAN GVSVSQLRSE LSASVQKVSY  120
NNISVPDESG SLIRCVDEYL VDVSNSESSN PSNSTNPSPK VADNIPQSPN SAAESVADFA  180
SKDARKDEIP KDAARVVVEQ VEEENKGKSS SDQKDNGIYS TSTDSDLPSP DLCTKIEPDL  240
PADSLHYHYS DRQMSQLSSA DHAMLDEASD IQTKPLETAH DCRNDNDKIN SMSSAPDECI  300
MQHDSQTKAG QHQSGIRRRC LQFEDAQRKI SPTSLGLQNT SGVVSCSIPP VSPAVIEVVA  360
SVSSDRSSTA SNRPSTQLTS SSDNFESFAV KVPMPSGIGL HLNSIAMQAG SRAIVSVKSA  420
ERGNLSIPGK KLTSMMSPHP SENLKSCSIS SNVVGSHLTS GDNDGDHESY GTNAESAASL  480
HLNDAKPLNN TVLLKPTEHT LSHKRKSSSE YIDSPMNYNQ SSPKKKRKKI SDGYDGDGCK  540
RCNCKKSKCL KLYCDCFAAG IYCAGSCACQ GCFNRVEYED TVNDVRQQIQ SRNPLAFCPK  600
IVQHPTDSPA SILGVEGASF TPPSARHKRG CSCKKSMCLK KYCECYQANV GCSSGCRCEG  660
CKNVYGLKEE YGKDLVKKHC ITERLEKSVE EKVEMVTATS GLLQIDPRNQ CNLTPPTPSF  720
QCSNRGKNAS KSWFTSGRYL SSPESGQAIY GLSPASPTSS KNHDIDQETT GDIMDLVTFD  780
QEFNYGNAKL ANEFSPGFHV IGNTDDLLAL PKSQDLASNT GGQLIPQTVN FQSTWPLSWR  840
DSPITPMNQF DGSGMNALEL LNSDKKPYAM EDDTPEILKD SSMPQTGVKV SSPNKKRISP  900
PNRHLNELGS SSSGGGFKTG RKFILRAVPS FPPLTPCIDS KDVATHSADN SQKCSSGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	525	529	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	2e-56	CPP family protein

Link Out ? help Back to Top
Ensembl	OIT28825