PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OIT28652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 261aa MW: 30399 Da PI: 5.6481 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.7 | 5.2e-25 | 87 | 176 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ +++++ + + tr gC a l+v ++ ++kw+vtk+++eHnH+l+ OIT28652 87 DFYMAYGRQIGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYIHRKDR-VlpPPPATREGCPAILRVALR-ESKWVVTKFVKEHNHALM 176 6******************************************98883332.2448899**************.9***************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence |
MGFYKSDVAM GSPSSPAFGL DERNFPPVES NDDHDYFDEE LTTDMDMYVA EEDDKCLGHS 60 NGEQTPSDDA IEPQIGMDFN SRDDARDFYM AYGRQIGFTV RIHHNRRSRI NNVVIGQDFV 120 CSKEGFREKK YIHRKDRVLP PPPATREGCP AILRVALRES KWVVTKFVKE HNHALMSPSK 180 VPWRGSTKKL VSQDEKDQRI RELTLELYNE RQRCKRRCAA YQEQLQTLLK FIEDHTDHLS 240 RSVEEAVQRV KELDERLEES D |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 211 | 216 | RQRCKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43280.1 | 3e-37 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OIT28652 |