PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OIT28468 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 21361.2 Da PI: 6.4623 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.7 | 2e-38 | 9 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C aCk+lrrkCa dC++apyf+ e+ p+kfa++hk+FGasnv+kll ++p +r da+ +++yeA+ar++dPvyG+v+ i++lqqq++ l+a+l ++k++ OIT28468 9 PCGACKFLRRKCAIDCIFAPYFCTEEgPAKFAAIHKVFGASNVSKLLLHVPVADRCDAVVTIAYEAQARIKDPVYGCVANIFDLQQQVAYLQAQLMQVKAQ 109 7**********************99989********************************************************************99987 PP DUF260 101 l 101 l OIT28468 110 L 110 5 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 196 aa Download sequence |
MATGTGSSPC GACKFLRRKC AIDCIFAPYF CTEEGPAKFA AIHKVFGASN VSKLLLHVPV 60 ADRCDAVVTI AYEAQARIKD PVYGCVANIF DLQQQVAYLQ AQLMQVKAQL AQSFINSSNS 120 NIPQWSNNNM ESISGLMTSS LPANNPTNYN CFKSNSSPQS SLESSDNCSD IGMNIQDIQS 180 LDQLLYQTYT SRNIGF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42430.1 | 8e-51 | LBD family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OIT28468 |