PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT28234
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 233aa    MW: 25722.1 Da    PI: 8.1922
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT28234genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-1178125454
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               ++  rE++RRdr+N++f eL  ll +    + +K +K++iL  Av+ + +L
  OIT28234  78 SKACREKQRRDRLNDKFTELGALLEPG---RPPKTDKSAILVDAVRMVTQL 125
               5678**********************8...89**************99988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MVSPENTNWL YDYGFEESAV PDSNFSATAS GFNWPMQNLN GSTNVSAEVD GSIGESDYPK  60
ENGSKKRARV ESCAPTSSKA CREKQRRDRL NDKFTELGAL LEPGRPPKTD KSAILVDAVR  120
MVTQLRGEAQ KLKDSNLNLQ EKIKELKAEK NELRDEKQKL KAEKEKLEQQ LKTTNAQPGF  180
LPPAIPAAFA PHGQVPGSKL VPIMSYPGVA MWQFMPPAAV DTSQDHVLRP PVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.19e-97bHLH family protein