PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT27939

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 705aa MW: 78390.7 Da PI: 6.2704

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT27939	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	114	138	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a+tG C+y d+C+F+H+ OIT27939 114 ICPEVAKTGkvsACPYSDKCRFSHD 138 5999********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence
MENETLTDSS PAATATEQPE APVQQSSSNI DYGEVNQPFR TPEELVAKAI APVKREYIRP 60 PPSRPSNNNN NNGAVGVEND DAAEVKSAPI LKEKKSKRQI KRERRQEQKS PLHICPEVAK 120 TGKVSACPYS DKCRFSHDLE AFKAEKPADI EGSCPFLVYE GPCPYGLACR FAGTHEDDVS 180 AQTEKISRKS SELNFFNKDT QKLLWKNKMK FPKAEATLKL LGLEGHPKDK ILVDKEENGE 240 VVPKEPATDT KTDSNEAASD CSNKVEITPS ISPEDDVVEN NMADDIRPLK KAKSSIDEIC 300 SSQASNGSSV QGEVLDSNCD VNKSDPTAGM VTDSDKSLKL HPREKKLIDF RDKLYLAPLT 360 TVGNLPFRRV CKVLGADVTS GEMAMCTNLL QGQASEWALL RRHSSENLFG VQICGAYPDT 420 VTKTVELIEQ ECSVDFIDIN MGCPIDIVVN KGAGSALLTK PMRMKSVVKA ASATVDIPVT 480 IKVRTAYFEG KNRIDSLIAD IGNWGATAVT IHGRSRQQRY SKLADWDYIY QCVQRAPKSL 540 QVLGNGDVFS YLDWNKHKTD SPELSTCMIA RGALIKPWIF TEIKEQRHWD ITSGERLDIL 600 KDYARFGLEH WGSDSKGVET TRHFLLEWLS YTCRYVPVGL LEIIPQRINW RPPSYYGRDD 660 LETLMASDSA ADWIRISEML LGKVPAGFSF APKHKSNAYD RAENG

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence

MENETLTDSS PAATATEQPE APVQQSSSNI DYGEVNQPFR TPEELVAKAI APVKREYIRP  60
PPSRPSNNNN NNGAVGVEND DAAEVKSAPI LKEKKSKRQI KRERRQEQKS PLHICPEVAK  120
TGKVSACPYS DKCRFSHDLE AFKAEKPADI EGSCPFLVYE GPCPYGLACR FAGTHEDDVS  180
AQTEKISRKS SELNFFNKDT QKLLWKNKMK FPKAEATLKL LGLEGHPKDK ILVDKEENGE  240
VVPKEPATDT KTDSNEAASD CSNKVEITPS ISPEDDVVEN NMADDIRPLK KAKSSIDEIC  300
SSQASNGSSV QGEVLDSNCD VNKSDPTAGM VTDSDKSLKL HPREKKLIDF RDKLYLAPLT  360
TVGNLPFRRV CKVLGADVTS GEMAMCTNLL QGQASEWALL RRHSSENLFG VQICGAYPDT  420
VTKTVELIEQ ECSVDFIDIN MGCPIDIVVN KGAGSALLTK PMRMKSVVKA ASATVDIPVT  480
IKVRTAYFEG KNRIDSLIAD IGNWGATAVT IHGRSRQQRY SKLADWDYIY QCVQRAPKSL  540
QVLGNGDVFS YLDWNKHKTD SPELSTCMIA RGALIKPWIF TEIKEQRHWD ITSGERLDIL  600
KDYARFGLEH WGSDSKGVET TRHFLLEWLS YTCRYVPVGL LEIIPQRINW RPPSYYGRDD  660
LETLMASDSA ADWIRISEML LGKVPAGFSF APKHKSNAYD RAENG

Link Out ? help Back to Top
Ensembl	OIT27939