PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT27539 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 24347.5 Da PI: 7.3442 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.6 | 2.6e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl++e++ r+ +Pv+Gavg++++++++++q+++e++l OIT27539 2 SCNGCRILRKGCNENCILRQSLqgiesPHAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLFESCGRTVNPVHGAVGLLWTGNWHVCQAAVETVL 102 6***********************************************************************************************99876 PP DUF260 97 l 97 OIT27539 103 K 103 5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MSCNGCRILR KGCNENCILR QSLQGIESPH AQANATVFVA KFFGRAGLMS FLSSVPESQR 60 PALFQSLLFE SCGRTVNPVH GAVGLLWTGN WHVCQAAVET VLKGGVLRPL PEFSGVTALP 120 ESDSASEAND VDLFRSQSFN FRSKRKVMDE VAEDLDLGLS SGLPAKMTAT GGRMSRRTEK 180 RREATPSLNS DESDTTTLES GFMCHQNPQQ GQGDDTKLLR LFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 3e-73 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT27539 |