PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27477
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 305aa    MW: 34518.9 Da    PI: 5.0111
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27477genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.71.2e-211153345
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               e++snrqvt++kRr+gilKKA+E+Sv Cd ++++++fs+tgk
  OIT27477 11 LESSSNRQVTYCKRRAGILKKAKEISVVCDSDILLLMFSPTGK 53
              699**************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MGRVRLNMRK LESSSNRQVT YCKRRAGILK KAKEISVVCD SDILLLMFSP TGKPTLFLGE  60
RSNFDEIIAK FAQLTPQERA KRKLESLETL RKTFKKLDHD VGVQEFLDAS DPSVEELHNQ  120
VKVLQSRLTD VEKRLSRQDE QTLTCHPANN SQNIPFPVAP NFLTQGDMGC SGDTSVAECS  180
HVLDSGKELE LDRARQTTAM LDDTVWDDLN SIACLRQQLS EPYSYYPCDN LNLLERKSLD  240
SQSEVDLRGY LMDYEIQRNF NLPRSVDSVN NSWDSAAGAS AAPILDEKSY PQFLDLFPAA  300
RELFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.12e-57M-type_MADS family protein