PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT27183

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

E2F/DP

Protein Properties

Length: 484aa MW: 52572.7 Da PI: 4.6406

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT27183	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.3	2.3e-27	162	227	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+g+++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg OIT27183 162 RYDSSLGLLTKKFINLIKHAEDGMLDLNQAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 227 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MSFDTKMTGP DAPPTGVAAP PAAQSSSAAV NGGGRSQISQ PIKRYLPFTS MRPPFVSPED 60 YHRFGGVDSR IGSPTLQPDA IVVKSPALKR KGGMGYKAVE SGDWTANPGY SDVANSPLGT 120 PVSGKGGRAN GRSRATKSNK SGPPTPVSNV GSPSPLTPAS CRYDSSLGLL TKKFINLIKH 180 AEDGMLDLNQ AADTLEVQKR RIYDITNVLE GIGLIEKKLK NRIQWKGVDA SKPGEVDNDA 240 AILKAETESL SMEERRLDDR VRELQEKLRD MSEDEDNQKW LFVTEEDIKS LPCFQNETLI 300 AVKAPHGTTL EVPDPDEAVD YPQRRYRIIL RSTMGPIDVY LVSQFEEKFE EMNSVEPSMA 360 IPVASSSGSK DNPAMERSAL SNNVTENEGQ TQNVDQLSSD LGTSQDYGGG MMKVVPSDVD 420 NDADYWLLSD AHVSITNMWE ADPAVEWDGE NLLHEFGIAD LGSPRAHTPS AVTDVPTPMN 480 VPPR

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MSFDTKMTGP DAPPTGVAAP PAAQSSSAAV NGGGRSQISQ PIKRYLPFTS MRPPFVSPED  60
YHRFGGVDSR IGSPTLQPDA IVVKSPALKR KGGMGYKAVE SGDWTANPGY SDVANSPLGT  120
PVSGKGGRAN GRSRATKSNK SGPPTPVSNV GSPSPLTPAS CRYDSSLGLL TKKFINLIKH  180
AEDGMLDLNQ AADTLEVQKR RIYDITNVLE GIGLIEKKLK NRIQWKGVDA SKPGEVDNDA  240
AILKAETESL SMEERRLDDR VRELQEKLRD MSEDEDNQKW LFVTEEDIKS LPCFQNETLI  300
AVKAPHGTTL EVPDPDEAVD YPQRRYRIIL RSTMGPIDVY LVSQFEEKFE EMNSVEPSMA  360
IPVASSSGSK DNPAMERSAL SNNVTENEGQ TQNVDQLSSD LGTSQDYGGG MMKVVPSDVD  420
NDADYWLLSD AHVSITNMWE ADPAVEWDGE NLLHEFGIAD LGSPRAHTPS AVTDVPTPMN  480
VPPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	1e-155	E2F/DP family protein

Link Out ? help Back to Top
Ensembl	OIT27183