PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT27147

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 162aa MW: 18377.1 Da PI: 9.4739

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT27147	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	46	68	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H OIT27147 46 FECKTCNRQFSSFQALGGHRASH 68 89**********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MVVLPIKRDR EGELRTNITT MANYLMLFSS QENHIDTINN SPSRVFECKT CNRQFSSFQA 60 LGGHRASHKK PRLMGELNFN HLPSSPPKPK THECSICGLE FPIGQALGGH MRRHRAILND 120 NNIQVPHHVV KKSNNSRTVL CLDLNLTPLE NDLEFKLGNQ LL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	4e-38	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT27147