PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT27088

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 415aa MW: 45407.1 Da PI: 5.3074

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT27088	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl OIT27088 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.1	3.5e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l OIT27088 67 RGKFTLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF TLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLLKMG 120 IDPVTHKPKN DTLLSNDGQS KNSANLSHMA QWESARLEAE ARLVRQSKLR SNSFQNSSFA 180 SQEFTTSSPS SPLNKPVVGP SRCLDVLKAW NGVWTKPMNE ITASGSATIS VTGLDLEESP 240 TSTLGYFDQN APHISTPGIN GGNSTVLFEF VGNSSGSSEG GIMNNEESEE DWKGFGNSST 300 GQLPEYKDGI NENSVSFTSG LQDLTMPMDN TWTAESLKSN AEQISPANFV ETFTDLLLSS 360 NSGDGVLSEN GTESDNGGEA GGNGNASENC EDNKNYWNSI FNLVNNSSPS DSAMF

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF TLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLLKMG  120
IDPVTHKPKN DTLLSNDGQS KNSANLSHMA QWESARLEAE ARLVRQSKLR SNSFQNSSFA  180
SQEFTTSSPS SPLNKPVVGP SRCLDVLKAW NGVWTKPMNE ITASGSATIS VTGLDLEESP  240
TSTLGYFDQN APHISTPGIN GGNSTVLFEF VGNSSGSSEG GIMNNEESEE DWKGFGNSST  300
GQLPEYKDGI NENSVSFTSG LQDLTMPMDN TWTAESLKSN AEQISPANFV ETFTDLLLSS  360
NSGDGVLSEN GTESDNGGEA GGNGNASENC EDNKNYWNSI FNLVNNSSPS DSAMF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-116	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT27088