PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT26832

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ARF

Protein Properties

Length: 696aa MW: 76893 Da PI: 7.8582

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26832	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.6	1.3e-24	113	214	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + +++el+v OIT26832 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAENGELCV 209 89**************************997556555..8********************************************..449999* PP EEE-S CS B3 95 kvfrk 99 +++r+ OIT26832 210 GIRRA 214 ***97 PP
2	Auxin_resp	116.2	2.9e-38	273	356	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++FevvY+Prast+eF+v++++v++a++++++ GmRfkmafetedss++++ +Gt+++++ +dp++WpnS+Wr+L+ OIT26832 273 AAYLAASGQPFEVVYYPRASTPEFCVRASSVNTAMRIHWCSGMRFKMAFETEDSSRISWfMGTISSIQVADPIHWPNSPWRLLQ 356 577899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MKEVMEKYVD SQLWHACAGG MVQIPPVNSK VYYFPQGHAE HTLVNVDFST LPRTPALILC 60 RVAAVKFLAD PETDEVYARI RLVPVGNKGN DFDDDNILGG SNETGTNDKP TSFAKTLTQS 120 DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG ETWKFRHIYR GTPRRHLLTT 180 GWSNFVNQKK LVAGDSIVFL RAENGELCVG IRRAKRGGIG GPETPSGWNS ASGNFSGFSA 240 FLREDMNKNG SLNSSGGSFR GKGRVRPEAV IEAAYLAASG QPFEVVYYPR ASTPEFCVRA 300 SSVNTAMRIH WCSGMRFKMA FETEDSSRIS WFMGTISSIQ VADPIHWPNS PWRLLQVTWD 360 EPDLLQNVKH VSPWLVELVS NMPVIHLSPF SPPRKKLRLP PDFLLDGQFP LPSFSGNPLR 420 SSSPFCCLSD NITAGIQRAR HAQFGVPLLD LHLSNKVQSG LLPPSFQRVA ADSKLTNCIN 480 KGQNDRNDNI SCLLTMSTSS QMSEKTDSVN TPRFLLFGQP ILTEQQISNR CSANAQEVQT 540 GRDLGRIELR NERFAFEQKG LQDSVSSATY LWNRGHHAAG LGADTGQCKV FLESEDVGLS 600 LDLSVLGSYE ELYRRLGNLF GLERSDMLTC VLYHDATGAV KHTGDEPFSD FIKTAKRLTI 660 LMNPSSNIER KWITGLATAE RGLDSSNRAG PLSIFA

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MKEVMEKYVD SQLWHACAGG MVQIPPVNSK VYYFPQGHAE HTLVNVDFST LPRTPALILC  60
RVAAVKFLAD PETDEVYARI RLVPVGNKGN DFDDDNILGG SNETGTNDKP TSFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG ETWKFRHIYR GTPRRHLLTT  180
GWSNFVNQKK LVAGDSIVFL RAENGELCVG IRRAKRGGIG GPETPSGWNS ASGNFSGFSA  240
FLREDMNKNG SLNSSGGSFR GKGRVRPEAV IEAAYLAASG QPFEVVYYPR ASTPEFCVRA  300
SSVNTAMRIH WCSGMRFKMA FETEDSSRIS WFMGTISSIQ VADPIHWPNS PWRLLQVTWD  360
EPDLLQNVKH VSPWLVELVS NMPVIHLSPF SPPRKKLRLP PDFLLDGQFP LPSFSGNPLR  420
SSSPFCCLSD NITAGIQRAR HAQFGVPLLD LHLSNKVQSG LLPPSFQRVA ADSKLTNCIN  480
KGQNDRNDNI SCLLTMSTSS QMSEKTDSVN TPRFLLFGQP ILTEQQISNR CSANAQEVQT  540
GRDLGRIELR NERFAFEQKG LQDSVSSATY LWNRGHHAAG LGADTGQCKV FLESEDVGLS  600
LDLSVLGSYE ELYRRLGNLF GLERSDMLTC VLYHDATGAV KHTGDEPFSD FIKTAKRLTI  660
LMNPSSNIER KWITGLATAE RGLDSSNRAG PLSIFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28350.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	OIT26832