PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT26818 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 301aa MW: 33763.9 Da PI: 7.0377 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138 | 3.4e-43 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++ +l +k+e OIT26818 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEYRLRDPVYGCVGLISVLQHKLKQVQDDLLNAKKE 106 7********************************************************************************************9888876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNATQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISVLQ HKLKQVQDDL LNAKKELATY IGPSAMLPIL 120 QHPGYIQQHP NNPSSSTMMP YNMQPMLGLP TGMQQQQQHG AQLMLRDPQQ QQQQNQQQVI 180 EAHQLAAAMA AREQQEMLRT YEQQPQQQQH PQFNSGFDSA GSPVTATGFH QMSSSVSPSL 240 ALGSFDNPYQ IQQTQQEHCG QVQVQPHQLL QQQQQLAQQP QTPQQQQRAK SEEERSIGPS 300 C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 5e-74 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT26818 |