PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT26754

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 432aa MW: 49307.8 Da PI: 6.1225

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26754	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	150	173	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H OIT26754 150 YICSVCGRKCKTNLDLKKHFKQlH 173 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MLMSTTIFSS IHLKTSSFFP TPLPTKHQNL TFSFKPNSPI APIKWHHISS CAAGQEIDME 60 RTNEGLYTAK PKKVVILWDL DNKPPRGPPY EAAMSLKKVA QCFGEVVDMS AYANRHAFIH 120 LPQWVVEQRR ERRHLDVLER KGAVTSSEPY ICSVCGRKCK TNLDLKKHFK QLHERERQKK 180 LSRMRSLKGK KRQKFKERHV DGNYKYIEAA RSLITPKVGY GLAAELRRAG VFVKTVADKP 240 QAADWALKKQ MQHSMTRGID WLFLVSDDSD FCDMLRRAKE ANLGTVVVGD MDRALGRHAD 300 LWIPWNGVEN GEIKEKDLVL KLERRRESWG RSNARFSVSE FNGGISEEGT SVGSLMDDIV 360 EKLELSGARI SAFSEGEEDE DVEELDEEDW LRARLDQPGD DNYDTEDSLL DSEDEEGDYL 420 LDSDDEDLGQ MV

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MLMSTTIFSS IHLKTSSFFP TPLPTKHQNL TFSFKPNSPI APIKWHHISS CAAGQEIDME  60
RTNEGLYTAK PKKVVILWDL DNKPPRGPPY EAAMSLKKVA QCFGEVVDMS AYANRHAFIH  120
LPQWVVEQRR ERRHLDVLER KGAVTSSEPY ICSVCGRKCK TNLDLKKHFK QLHERERQKK  180
LSRMRSLKGK KRQKFKERHV DGNYKYIEAA RSLITPKVGY GLAAELRRAG VFVKTVADKP  240
QAADWALKKQ MQHSMTRGID WLFLVSDDSD FCDMLRRAKE ANLGTVVVGD MDRALGRHAD  300
LWIPWNGVEN GEIKEKDLVL KLERRRESWG RSNARFSVSE FNGGISEEGT SVGSLMDDIV  360
EKLELSGARI SAFSEGEEDE DVEELDEEDW LRARLDQPGD DNYDTEDSLL DSEDEEGDYL  420
LDSDDEDLGQ MV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	170	RRERRHLDVLERKGAVTSSEPYICSVCGRKCKTNLDLKKHFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-162	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT26754