PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT26399

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 476aa MW: 52497.9 Da PI: 9.9959

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26399	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H OIT26399 68 FICEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	12	0.00066	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + OIT26399 144 WKCEKCSKKYAVQSDWKAHSKIC 166 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MMSDNGLSSL PSSIRGLIQQ DPNPNSNISN PNSNPASNKR KRNLPGNPDP DAEVIALSPK 60 FLMATNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT NKEVKKKVYI CPEKTCVHHD 120 PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHSKICGTRE YKCDCGTLFS 180 RKDSFITHRA FCDALAEESA RFTSDPNTAN LNLRNQLMNG GMTNQQQQRG INSQFGSLFR 240 PELMGLGLDP SSQLNLDGQK PRLPLWLDNA NSGSPNDFLA TPSSTTSSLP HDLVQMASHS 300 SNNQWFINGN GPSSSSMASP RVVLKEEEEI NNRRNLSGST INSSMYYNNS QQETTPPQAA 360 HMSATALLQK AAQMGSTRSS NSALFNSTGF GLMGSSNFGS TLATHDNIQG NNGLLLVDTN 420 ANSLMMMQNK GKQVNIPSGN TTEGSLTRDF LGVGGNENRP FLQQRELAKF GNSAIF

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MMSDNGLSSL PSSIRGLIQQ DPNPNSNISN PNSNPASNKR KRNLPGNPDP DAEVIALSPK  60
FLMATNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT NKEVKKKVYI CPEKTCVHHD  120
PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHSKICGTRE YKCDCGTLFS  180
RKDSFITHRA FCDALAEESA RFTSDPNTAN LNLRNQLMNG GMTNQQQQRG INSQFGSLFR  240
PELMGLGLDP SSQLNLDGQK PRLPLWLDNA NSGSPNDFLA TPSSTTSSLP HDLVQMASHS  300
SNNQWFINGN GPSSSSMASP RVVLKEEEEI NNRRNLSGST INSSMYYNNS QQETTPPQAA  360
HMSATALLQK AAQMGSTRSS NSALFNSTGF GLMGSSNFGS TLATHDNIQG NNGLLLVDTN  420
ANSLMMMQNK GKQVNIPSGN TTEGSLTRDF LGVGGNENRP FLQQRELAKF GNSAIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-114	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT26399