PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT26393

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CAMTA

Protein Properties

Length: 961aa MW: 107572 Da PI: 6.5416

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26393	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	168.8	8.4e-53	13	127	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlL 102 +e + rwl++ e++ iL n+e +l+++++++p sgs++L+n+++ ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqrr+yw+L OIT26393 13 REgRFRWLRPAEVLFILRNHEDQQLANQPPQKPASGSMFLFNKRVHRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEKNPNFQRRSYWML 113 56689********************************************************************************************** PP CG-1 103 eeelekivlvhyle 116 + ++++ivlvhy++ OIT26393 114 DPAYDHIVLVHYRD 127 **********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence
MAESGYNINN LVREGRFRWL RPAEVLFILR NHEDQQLANQ PPQKPASGSM FLFNKRVHRY 60 FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNPNFQRRSY WMLDPAYDHI 120 VLVHYRDITE GMQIAAFMSQ SSPISSTFSL SPSIYSTQHP GFTVVGSESY QQYQNESSPG 180 SGEVCSGVGI NSNGMNISDI TRRTEGVSSS PRVEISQALR KLEEHLSLNE TDPLYSEIEN 240 SDDVEHFGHD NSSLVQIQHK SNNLLLQPHS GESSESQHQL LNLDGDIWKE MLDHCRSFPA 300 VESQDKCFEK FDENGTLQTL SGMGPIEAAE SDRWLKFGGK EALKSSLTNF KQVEDFKYPA 360 CARKNTYGSY SDQYTTIFDQ DQIGTSFEDD MSLTIAQEQK FTFHDISPDW GYSSEATKVI 420 IVGSFLCNPS EYTWTCMFGD IEVPVQIIKE GAIRCQAPPH LPGKVTLCVT TGNRVSCSEV 480 REFEYRAKFE DHGQNNLAEV GGACKSSEEL LHLVRFVQML LSDSSVQKGD GSGSSNDILE 540 NSKASEDSWS QVIESLLFGT STSMVTVDWL LQELLKDKLQ QWLLSKLQVQ NNQMGYSFSR 600 KEQGIIHMVA VLGFEWALHP ILDAGVSVNF RDINGWTALH WAARFGREKM VASLVASGAF 660 AGAVTDPTSQ DPFGKTAASI ASSCGHKGVA GYLSEVALTS HLSSLTLEES ELSKGTADVE 720 AERTISSIST TNAATHEDQL SLKDTLAAVR NAAQAAARIQ SAFRAHSFRK RRQREAARAA 780 TTSGDEYCVL SNDVLGLSAA SKLAFRNMRD YNSAALAIQK KYRGWKCRKD FLAFRQKVVK 840 IQAHVRGYQV RKEYKVCWAV GILEKVVLRW RRRGVGLRGF RLEEEPIEES EDEDILKLFR 900 KQKVDAAINE AVSRVLSMVD SPEARQQYHR ILEKYRQAKA ELGVNSDTVS TAHGDISNSD 960 I

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence

MAESGYNINN LVREGRFRWL RPAEVLFILR NHEDQQLANQ PPQKPASGSM FLFNKRVHRY  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNPNFQRRSY WMLDPAYDHI  120
VLVHYRDITE GMQIAAFMSQ SSPISSTFSL SPSIYSTQHP GFTVVGSESY QQYQNESSPG  180
SGEVCSGVGI NSNGMNISDI TRRTEGVSSS PRVEISQALR KLEEHLSLNE TDPLYSEIEN  240
SDDVEHFGHD NSSLVQIQHK SNNLLLQPHS GESSESQHQL LNLDGDIWKE MLDHCRSFPA  300
VESQDKCFEK FDENGTLQTL SGMGPIEAAE SDRWLKFGGK EALKSSLTNF KQVEDFKYPA  360
CARKNTYGSY SDQYTTIFDQ DQIGTSFEDD MSLTIAQEQK FTFHDISPDW GYSSEATKVI  420
IVGSFLCNPS EYTWTCMFGD IEVPVQIIKE GAIRCQAPPH LPGKVTLCVT TGNRVSCSEV  480
REFEYRAKFE DHGQNNLAEV GGACKSSEEL LHLVRFVQML LSDSSVQKGD GSGSSNDILE  540
NSKASEDSWS QVIESLLFGT STSMVTVDWL LQELLKDKLQ QWLLSKLQVQ NNQMGYSFSR  600
KEQGIIHMVA VLGFEWALHP ILDAGVSVNF RDINGWTALH WAARFGREKM VASLVASGAF  660
AGAVTDPTSQ DPFGKTAASI ASSCGHKGVA GYLSEVALTS HLSSLTLEES ELSKGTADVE  720
AERTISSIST TNAATHEDQL SLKDTLAAVR NAAQAAARIQ SAFRAHSFRK RRQREAARAA  780
TTSGDEYCVL SNDVLGLSAA SKLAFRNMRD YNSAALAIQK KYRGWKCRKD FLAFRQKVVK  840
IQAHVRGYQV RKEYKVCWAV GILEKVVLRW RRRGVGLRGF RLEEEPIEES EDEDILKLFR  900
KQKVDAAINE AVSRVLSMVD SPEARQQYHR ILEKYRQAKA ELGVNSDTVS TAHGDISNSD  960
I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein

Link Out ? help Back to Top
Ensembl	OIT26393