PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT25845

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 230aa MW: 25481.8 Da PI: 5.8268

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT25845	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.8	5e-07	165	184	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 C++Cgk F+r nL+ H+r OIT25845 165 FCTICGKGFKRDANLQMHMR 184 6******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MSFLEQKIHQ LQELVHIIAD HKSLVGIQGN DLSIQQQQLI TADLTSIIVQ LISTAGSLFP 60 TVKHHTLSSA SPTTKQHAQL GGVSVPSGKD INVGALPHSI NVTKAEDQPN QVDLMGDHGI 120 EQKHDVDEHE AKDDDEFHEE ENLPPSSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLQ 180 MHMRVMVMSL NPRFIGLDLA YPSRQLGPRG RQRTGDTEAP PALQLIQTSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-57	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT25845