PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT25622
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 696aa    MW: 76982.5 Da    PI: 7.7307
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT25622genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.7e-24123224199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +++ l+v
  OIT25622 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAENGDLCV 219
               89****************************986445444..8999*********************************************..4488999** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +++r+
  OIT25622 220 GIRRA 224
               **997 PP
2Auxin_resp113.91.5e-37291374183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+ +++FevvY+Prast+eFvvk++ v++a++v++s GmRfkm fetedss++++ +Gt+++v+  dp++WpnS+Wr+L+
    OIT25622 291 AAKLAACGQPFEVVYYPRASTPEFVVKASAVRAAMRVQWSSGMRFKMPFETEDSSRISWfMGTISSVHVEDPIHWPNSPWRLLQ 374
                 6889999***************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    
MINIMNPVNK PMNEVEKGLD PQLWHACAGG MVQMPPLNSK AFYFPQGHAE HAHKNVDFGG  60
FPKIPPLTLC RVSSIRYLAD TETDEVYAKI RLVPLKGNEC DVEDDAGFLG LDKNENQEKP  120
NSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILAKDVHG EVWKFRHIYR  180
GTPRRHLLTT GWSNFVNQKK LVAGDSIVFL RAENGDLCVG IRRAKRGIGS GPEVNSGWNT  240
GPGNYASSLY HGFPGFLSED EKKFIRNGQA AKSDDGIRGK GKVRAESVIE AAKLAACGQP  300
FEVVYYPRAS TPEFVVKASA VRAAMRVQWS SGMRFKMPFE TEDSSRISWF MGTISSVHVE  360
DPIHWPNSPW RLLQVHWDEP DLLQNVKRVS PWLVELVSNM PPIHLSPFSP PRKKLRLPQP  420
PEFPMVGQLS MSSLLNNPLS PSSPLCCISD NIPAGIQGAR HAQCGLSSSD IHFNKLQAGL  480
LPFGFKELER SVPPSRLLKG GSFMTSFDND ENISCLLTMG NTSPTSTKRK ETQTPTFMLF  540
GKPILTKQQM SLSCSSETVG NSSSNGNPEK MMNLSEGSGS AVIHNGPPEN SSGEVLPWYK  600
DQKLEFRMET GHCKVFMESD DVGRTLDLSV LGSYEELYKK LADMFGVGTS EMLSNVLYQD  660
LTGAVKHTGD EPFSQFVKTA RRLTILTDSG SDNIRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein