PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT24549

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 718aa MW: 80100.6 Da PI: 6.5149

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT24549	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	8.1e-06	125	145	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C ff++ G+C GdrC+F H OIT24549 125 VPCIFFQQ-GFCLKGDRCPFFH 145 79****.*********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence
MVGPTPPQQL QIQTPSTAAA PATLSAEDEA LKRNTDCVYF LASPLTCKKG SECEYRHSDV 60 ARLNPRDCWY WLNGSCLNPK CGFRHPPLDG FLGAQVQTPK GSSVPPVASV APTPNVPYGS 120 GKQGVPCIFF QQGFCLKGDR CPFFHAPISV SNKAPPHPVS TASTEKTPIK KAFGGFEKCV 180 QGKTFSQAST WKSGELPVQA QPVGKLGTHL SKNDAAFNEN VLPPNSVIDF SHHRHKPKSV 240 PPTNGNPVGR SNRVQQSVRF DDHSGIQNPK DDDISRELSP GFDVLVDDEL RGNDFYHGED 300 QYGRNEGRNE YDIGHSADYT SVADIDQDAY HDVYGRDSHD RLPSRSGRVQ HRPSSERIQG 360 ESAHPERRRY GRAYSPEEVR ESDLRHRLSK HKRVNGLRSV ISHDYASEKH VDNRGYQSSR 420 RDRHHLPSHD SSVASRLQGR IKLPSRSSSP TNGTDMRLDR DMDRARDRGR LSLERPQLLS 480 QQGRLRDRIK GRVQEDLNNA GRNNSGPRLR RDISENDSDF SGPRSLAELK GRKTADISEQ 540 NVNEQQALGK RKFQKRDGYQ QSGGDLSFEG PMPLQEILKR KRSETGMTSD KSEDYQRERK 600 DHSLVTSSIS RSRSNLGQKE ESPPSGGKNG PQETISAGHQ SPLHDGANEL EAEEGMIVEE 660 EDDQDPKGHD QRDYDYEQVD GEDYNLDEGE NADAGEEYLD EDDDDGDDFA KKMGVVFS

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence

MVGPTPPQQL QIQTPSTAAA PATLSAEDEA LKRNTDCVYF LASPLTCKKG SECEYRHSDV  60
ARLNPRDCWY WLNGSCLNPK CGFRHPPLDG FLGAQVQTPK GSSVPPVASV APTPNVPYGS  120
GKQGVPCIFF QQGFCLKGDR CPFFHAPISV SNKAPPHPVS TASTEKTPIK KAFGGFEKCV  180
QGKTFSQAST WKSGELPVQA QPVGKLGTHL SKNDAAFNEN VLPPNSVIDF SHHRHKPKSV  240
PPTNGNPVGR SNRVQQSVRF DDHSGIQNPK DDDISRELSP GFDVLVDDEL RGNDFYHGED  300
QYGRNEGRNE YDIGHSADYT SVADIDQDAY HDVYGRDSHD RLPSRSGRVQ HRPSSERIQG  360
ESAHPERRRY GRAYSPEEVR ESDLRHRLSK HKRVNGLRSV ISHDYASEKH VDNRGYQSSR  420
RDRHHLPSHD SSVASRLQGR IKLPSRSSSP TNGTDMRLDR DMDRARDRGR LSLERPQLLS  480
QQGRLRDRIK GRVQEDLNNA GRNNSGPRLR RDISENDSDF SGPRSLAELK GRKTADISEQ  540
NVNEQQALGK RKFQKRDGYQ QSGGDLSFEG PMPLQEILKR KRSETGMTSD KSEDYQRERK  600
DHSLVTSSIS RSRSNLGQKE ESPPSGGKNG PQETISAGHQ SPLHDGANEL EAEEGMIVEE  660
EDDQDPKGHD QRDYDYEQVD GEDYNLDEGE NADAGEEYLD EDDDDGDDFA KKMGVVFS

Link Out ? help Back to Top
Ensembl	OIT24549