PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT24019
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 220aa    MW: 23995 Da    PI: 7.7536
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT24019genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.74.7e-39301301100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdP+yG+v++i++lqqq+ +l+aela+++++
  OIT24019  30 PCGACKFLRRKCVRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPIYGCVAHIFTLQQQVVSLQAELAYVQAR 130
               7***********************9989*********************************************************************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MNGGCGSADR QYNNDNNNNN NVVGAGGGGP CGACKFLRRK CVRGCIFAPY FDSDQGTAHF  60
AAVHKVFGAS NASKLLLRIP AHKRLDAVVT LCYEALARVR DPIYGCVAHI FTLQQQVVSL  120
QAELAYVQAR LSTLQHLPMR QGPQPQSPIT PTGLQSSSDI FCTTSSISSS SNNMEYPQFD  180
ITAGLSDSFD DQELENFELH TLAREFVSRH LPGVRFRPSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-64LBD family protein