PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT23411

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 427aa MW: 48389.6 Da PI: 8.4131

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT23411	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	3.9e-12	258	304	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+++N++f Lr+++P+ K++ a+ L Av YI++L OIT23411 258 KNHVEAERQRREKLNNRFYALRSVVPNV-----SKMDRASLLADAVTYINEL 304 589**********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MEDITSTSST NTLQKHLQYI IHSRQEWWVY AIFWQASKDA NGRLIFSWGD GHFRGTKDLA 60 NSAKVRIPNV DNNVSDTELF YMVSVSKYFV ADNELIVRAY NPTSYIWLNN YHELQLYNYD 120 RAKEAHLHGI RTLVCIPTPN GVVELGSSEI IQENWDLVQL SRSLFGLSNN NIITPSPINH 180 QGLFSYNFVS LGENHKVEND SPQATDSKLK QETVDGNISL GNSDSFENES STINNINRPI 240 KRGRKSSSSN ATRTEMAKNH VEAERQRREK LNNRFYALRS VVPNVSKMDR ASLLADAVTY 300 INELKAKVEE LESYKILSQK PKRQCATNSV QTVPSTVVNR ANNSFGMEVE VKIIGLEAMV 360 RVRSPDVNYP CARLMNVLRE LELQVNHASV SSVKNLMLQD VVIRVPNEVA NEEVLKSVIL 420 KRLSVAN

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MEDITSTSST NTLQKHLQYI IHSRQEWWVY AIFWQASKDA NGRLIFSWGD GHFRGTKDLA  60
NSAKVRIPNV DNNVSDTELF YMVSVSKYFV ADNELIVRAY NPTSYIWLNN YHELQLYNYD  120
RAKEAHLHGI RTLVCIPTPN GVVELGSSEI IQENWDLVQL SRSLFGLSNN NIITPSPINH  180
QGLFSYNFVS LGENHKVEND SPQATDSKLK QETVDGNISL GNSDSFENES STINNINRPI  240
KRGRKSSSSN ATRTEMAKNH VEAERQRREK LNNRFYALRS VVPNVSKMDR ASLLADAVTY  300
INELKAKVEE LESYKILSQK PKRQCATNSV QTVPSTVVNR ANNSFGMEVE VKIIGLEAMV  360
RVRSPDVNYP CARLMNVLRE LELQVNHASV SSVKNLMLQD VVIRVPNEVA NEEVLKSVIL  420
KRLSVAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	2e-68	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT23411