PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT23058
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 471aa    MW: 53008.7 Da    PI: 6.3068
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT23058genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS469.42e-143474681374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lLl+cA++vs g+le+a+ +L ++s+lasp+gd+mqR+a++fteALa r++rs++++ykal++++ s   +se + ++k+f+e +P+lk++++++Nqa
  OIT23058  47 LIHLLLACANHVSCGSLENANIALDHISQLASPNGDTMQRIASHFTEALADRILRSWPGIYKALRSTKLS--VVSEDILVRKMFFEFFPFLKVAFVVTNQA 145
               689*************************************************************999998..69*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
               I ea+ege++vHi+D++++++lQW aLlq L++Rpegpp+lRiTgv++    +ke l +++  L++ Ae+l++pf+fn  v+++ledl++e+Lrvk+gEal
  OIT23058 146 IIEAMEGEKMVHIVDLNAGEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLDQMAYVLTEEAEKLDIPFQFNQ-VVSQLEDLDVEKLRVKTGEAL 241
               ************************************************....9**************************.799****************** PP

      GRAS 203 aVnlvlqlhrll.......................................................desvsleserdevLklvkslsPkvvvvveqeadh 248
               a+++v+qlh+ll                                                       +++++++ + d +L+++++lsPkv+vv+eq+++h
  OIT23058 242 AISSVMQLHTLLghdnepqkksplpfkhsngvnlhralinqntlgellekdmghmangyspsndtasSSPLCSTTKMDGFLNALWGLSPKVMVVTEQDSNH 342
               ***************************************************************9988777888889************************* PP

      GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
               n+++++er++e+l+yy+alfd+le+ lpr+s er kvE++llg+ei+n++aceg er+erhe+lekW +r++ aGF+++pls++a+ qa++ll+ ++ +gy
  OIT23058 343 NGTTLMERLSESLHYYAALFDCLESALPRTSLERLKVEKMLLGEEIKNIIACEGLERKERHEKLEKWFQRFDVAGFGNAPLSYYAMLQARRLLQSYSCEGY 443
               ***************************************************************************************************** PP

      GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
               +++ee+g++v++W+dr+L+svS+Wr
  OIT23058 444 KIKEENGCVVICWHDRALFSVSSWR 468
               ************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    
MLQDDGSSSV TSSSPIQIFP IMSLSPGFSS SNQWLKELKS EERGLYLIHL LLACANHVSC  60
GSLENANIAL DHISQLASPN GDTMQRIASH FTEALADRIL RSWPGIYKAL RSTKLSVVSE  120
DILVRKMFFE FFPFLKVAFV VTNQAIIEAM EGEKMVHIVD LNAGEPLQWR ALLQDLSARP  180
EGPPHLRITG VHQQKEVLDQ MAYVLTEEAE KLDIPFQFNQ VVSQLEDLDV EKLRVKTGEA  240
LAISSVMQLH TLLGHDNEPQ KKSPLPFKHS NGVNLHRALI NQNTLGELLE KDMGHMANGY  300
SPSNDTASSS PLCSTTKMDG FLNALWGLSP KVMVVTEQDS NHNGTTLMER LSESLHYYAA  360
LFDCLESALP RTSLERLKVE KMLLGEEIKN IIACEGLERK ERHEKLEKWF QRFDVAGFGN  420
APLSYYAMLQ ARRLLQSYSC EGYKIKEENG CVVICWHDRA LFSVSSWRCR K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein