PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22968
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 182aa    MW: 20030.7 Da    PI: 8.1187
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22968genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.21.7e-4411109199
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
               +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+e+l++el+++++
  OIT22968  11 PCAACKFLRRKCLPGCIFAPYFPPEEPQKFINVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVERLQKELDAANA 109
               7*********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MASSSSSYNS PCAACKFLRR KCLPGCIFAP YFPPEEPQKF INVHKIFGAS NVTKLLNELL  60
PHQREDAVNS LAYEAEARVR DPVYGCVGAI SFLQRQVERL QKELDAANAD LIRYACNEYT  120
PPLPLPGTQA INMAAFRQRP VEFSRGFHQT PSFPIPYSIP NNWNDQNSSA GNIHGGGGGA  180
SI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.24e-73LBD family protein