PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22774
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 308aa    MW: 34075.7 Da    PI: 9.5529
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22774genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.4e-125094147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
         OIT22774 50 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 94
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MVMALPNLGS FSNPTAIAST AATASASNPL SPSDDPSKKI RKPYTITKSR ESWTEPEHDK  60
FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK SGTNEHLPPP RPKRKAAHPY  120
PQKASKSAPA LSPVTASFQA SLPLPDPGFV TRPDTSLLPS NPVTVASMPS WTDNSVSPVN  180
LSQMKKDNVR EPGQPVANTH CCSSNESTPG SKSTDEVMER TQGPSLRVLP DFVQVYNFIG  240
SVFDPAVTGH LQKLKKMDRI DVETVLLLMR NLSINLTSPD FEHHRQLLSS YDMDMEKQCK  300
SSHQLQPT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.27e-95MYB_related family protein