PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22710
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 80aa    MW: 9273.99 Da    PI: 11.3374
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22710genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.94.1e-26959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              krie+ s rq tfskRr g++KKA+ LS+LCd+++av++fss+g+l+e+ss
  OIT22710  9 KRIEDRSSRQATFSKRRSGLMKKANQLSILCDVDIAVVVFSSRGRLFEFSS 59
              79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    
MGRKKVEIKR IEDRSSRQAT FSKRRSGLMK KANQLSILCD VDIAVVVFSS RGRLFEFSST  60
NRFLLLFPNK EITLFCVVFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.15e-26MIKC_MADS family protein