PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22401
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 191aa    MW: 21317 Da    PI: 8.8052
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22401genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260146.19.9e-46141131100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ +k+e
  OIT22401  14 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKIFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQLDLSCAKSE 113
               7*********************************************************************************************999887 PP

Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MASSSSSTLS SYSPCAACKF LRRKCQPECV FAPYFPPDQP QKFANVHKIF GASNVTKLLN  60
ELQPHQREDA VNSLAYEADM RLRDPVYGCV GVISLLQHQL RQLQLDLSCA KSELSKYQNI  120
GGGIASTNSY SLLAAGNQHN LGFNFMGGGG GGRPDLNHHL YHHQFFPRDQ QQQQQQQIIR  180
RFERGSNNFG V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.37e-68LBD family protein